Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq78186 170 3e-37 >seq78186 Length=6745 Score = 170 bits (188), Expect = 3e-37 Identities = 526/807 (65%), Gaps = 30/807 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 1164 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 1105 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || |||| | || || ||| |||| | ||| || || || || Sbjct 1104 GGTGGCGTTGTACAGCTTGTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTC 1045 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || |||| ||| ||||||||| || | Sbjct 1044 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCCACGAGCGCGCAGGGGAGCGCGTCGCA 985 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| |||| || || || || || | || |||| |||| || |||| Sbjct 984 GACGAACTCCCTCTCGATGTCCACGGCCTCCGAGACGATCTCGAAGACGCGGGACTCGT- 926 Query 159886 CCCCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || ||||||| || |||| || | |||||||| || |||||||||||||| Sbjct 925 --CCAGCTTGCCGCGCAGGATGTCGT------AGAGGAGGCAGGCGAAGTCGCAGTGCAG 874 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 |||||||| || ||||||| ||||||||| | | ||||||||||||||| || ||| Sbjct 873 GCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCCCGCTT 814 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAA 160061 |||||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || | Sbjct 813 CTTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGA 755 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 | || |||| | ||| | || ||| | | | | | |||| | ||||| Sbjct 754 AGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGCGCAGCGCCCAG 699 Query 160121 TCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 || ||| ||||| | ||||| ||| |||| |||| || | | ||||| Sbjct 698 TCGGCC----TTGCGGCGGACGGCCGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTT 643 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 ||| | || ||| || | || ||| |||||||| || | ||| | || Sbjct 642 CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCGGAGTGGATGTT 583 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296 |||||||| ||||| ||| |||||| | ||||| |||||| || | Sbjct 582 CTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGCACGTCGGACAT 523 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||||| | || || | || | ||||||| ||| || ||||| || | ||| Sbjct 522 GAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCAC 463 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 ||| |||||||| || | |||||| ||| ||| | | |||||||| | |||| Sbjct 462 GTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGGGTGGTGTCCCAGTGGCGCGCGTCGGA 403 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | || ||||| || ||| |||| Sbjct 402 GGAGAGGTCCACCTCCTCGGCGGTCCA 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777081123515200