Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2155 105 3e-17 seq1750881 89.7 2e-12 seq752483 89.7 2e-12 seq35681 87.8 7e-12 >seq2155 Length=11791 Score = 105 bits (116), Expect = 3e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| ||||| ||||| ||||| ||||| || |||| |||| || | || Sbjct 5261 GTTCTCACTAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAGACAGTCTCTAAGGCT 5202 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||||||| || ||||||||||||||||| ||||| || || || || ||||| || Sbjct 5201 GTTATTACTGTCCCAGCTTATTTCAATGATGCTCAACGCCAGGCTACCAAGGATGCTGGT 5142 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 |||||||| | | ||| | | ||||| ||||| || || || |||||| | || Sbjct 5141 AGGATTGCTGGACTGGAGGTTATGAGGATTATCAATGAGCCCACTGCTGCTGCTTTGTCA 5082 Query 451445 TATGGA 451450 |||||| Sbjct 5081 TATGGA 5076 >seq1750881 Length=2368 Score = 89.7 bits (98), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||||||||| ||||| ||||||||||| || |||| || || || ||||| Sbjct 648 GCTGTCATTACTGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 589 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || | ||||||||| | |||| | | || || |||||||| || || |||||||| Sbjct 588 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 530 >seq752483 Length=2742 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || ||||| || || || ||||| || || || ||| Sbjct 984 ATGCAGATCTTTGTGAAAACTCTTACTGGGAAGACCATAACTCTAGAGGTCGAGAGTTCT 1043 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||| || || || ||||| || || || || || ||| Sbjct 1044 GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAA 1103 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | ||||||||||| |||||||| | || ||||| ||||| || Sbjct 1104 CAGAGGCTTATCTTTGCTGGGAAACAACTGGAAGATGGCCGCACCTTGGCTGATTACAAC 1163 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| | || || ||| Sbjct 1164 ATTCAGAAGGAGTCCACCCTCCAC 1187 Score = 87.8 bits (96), Expect = 7e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||| | ||||| || || ||||||||||| || || || Sbjct 1440 ATGCAGATTTTTGTCAAGACATTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 1499 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || || || ||||| ||||||||||| ||||| Sbjct 1500 GACACCATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 1559 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || ||||||| || || || ||||| | || ||||| |||||||| Sbjct 1560 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAAC 1619 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | || || | || ||||| Sbjct 1620 ATCCAAAAAGAATCCACTCTTCA 1642 >seq35681 Length=8613 Score = 87.8 bits (96), Expect = 7e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || ||||| |||||||||||||| | || || || || |||||||| Sbjct 6003 GCAGTGATCACAGTTCCTGCTTATTTCAATGACTCCCAGAGGACGGCTACAAAAGATGCT 5944 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | ||||| || || ||||||| || || || || ||||||||||| || || | Sbjct 5943 GGGCGCATTGCAGGGTTGGATGTTCTCCGTATCATAAACGAACCTACAGCGGCATCTTTG 5884 Query 451442 GCATATGG 451449 |||||||| Sbjct 5883 GCATATGG 5876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1929687112509360