Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq2155 105 3e-17
seq1750881 89.7 2e-12
seq752483 89.7 2e-12
seq35681 87.8 7e-12
>seq2155
Length=11791
Score = 105 bits (116), Expect = 3e-17
Identities = 135/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324
||||| ||||| ||||| ||||| ||||| || |||| |||| || | ||
Sbjct 5261 GTTCTCACTAAGATGAAGGAAACTGCAGAGGCTTACCTTGGCAAGACAGTCTCTAAGGCT 5202
Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384
|| |||||||| || ||||||||||||||||| ||||| || || || || ||||| ||
Sbjct 5201 GTTATTACTGTCCCAGCTTATTTCAATGATGCTCAACGCCAGGCTACCAAGGATGCTGGT 5142
Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444
|||||||| | | ||| | | ||||| ||||| || || || |||||| | ||
Sbjct 5141 AGGATTGCTGGACTGGAGGTTATGAGGATTATCAATGAGCCCACTGCTGCTGCTTTGTCA 5082
Query 451445 TATGGA 451450
||||||
Sbjct 5081 TATGGA 5076
>seq1750881
Length=2368
Score = 89.7 bits (98), Expect = 2e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || ||||||||||| ||||| ||||||||||| || |||| || || || |||||
Sbjct 648 GCTGTCATTACTGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 589
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440
|| | ||||||||| | |||| | | || || |||||||| || || ||||||||
Sbjct 588 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 530
>seq752483
Length=2742
Score = 89.7 bits (98), Expect = 2e-12
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || ||||| || ||||| || || || ||||| || || || |||
Sbjct 984 ATGCAGATCTTTGTGAAAACTCTTACTGGGAAGACCATAACTCTAGAGGTCGAGAGTTCT 1043
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | | || ||| || || || ||||| || || || || || |||
Sbjct 1044 GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAA 1103
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | || || | ||||||||||| |||||||| | || ||||| ||||| ||
Sbjct 1104 CAGAGGCTTATCTTTGCTGGGAAACAACTGGAAGATGGCCGCACCTTGGCTGATTACAAC 1163
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
||| | ||||| | || || |||
Sbjct 1164 ATTCAGAAGGAGTCCACCCTCCAC 1187
Score = 87.8 bits (96), Expect = 7e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || || ||| | ||||| || || ||||||||||| || || ||
Sbjct 1440 ATGCAGATTTTTGTCAAGACATTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 1499
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||| || | | || || || || || ||||| ||||||||||| |||||
Sbjct 1500 GACACCATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 1559
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | || || ||||||| || || || ||||| | || ||||| ||||||||
Sbjct 1560 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAAC 1619
Query 391230 ATTGATAAGGATGCAACACTTCA 391252
|| | || || | || |||||
Sbjct 1620 ATCCAAAAAGAATCCACTCTTCA 1642
>seq35681
Length=8613
Score = 87.8 bits (96), Expect = 7e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
||||| || || ||||| |||||||||||||| | || || || || ||||||||
Sbjct 6003 GCAGTGATCACAGTTCCTGCTTATTTCAATGACTCCCAGAGGACGGCTACAAAAGATGCT 5944
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| | ||||| || || ||||||| || || || || ||||||||||| || || |
Sbjct 5943 GGGCGCATTGCAGGGTTGGATGTTCTCCGTATCATAAACGAACCTACAGCGGCATCTTTG 5884
Query 451442 GCATATGG 451449
||||||||
Sbjct 5883 GCATATGG 5876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1929687112509360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |