Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq78186 141 1e-28 seq1747981 120 4e-22 seq779604 89.7 6e-13 >seq78186 Length=6745 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 732 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 791 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 792 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 851 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 852 GCTCATCTCCCGCGACGAGGGCCTGCAC 879 >seq1747981 Length=6417 Score = 120 bits (132), Expect = 4e-22 Identities = 205/291 (70%), Gaps = 20/291 (7%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 1630 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 1571 Query 15948 ATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 | |||| ||||| |||||| | |||||||||||||||| ||||| ||||| || | Sbjct 1570 ACAACAATGATACCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAACAGCTGATTCA 1513 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTC 16059 ||| || |||| |||||| ||| | |||||| | ||| | |||| | | Sbjct 1512 GAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCC 1459 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC-- 16117 | || |||||||| ||||||| || || ||||| || ||| || | | | |||| Sbjct 1458 CAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTT 1401 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 |||||||| || ||||| ||| || ||||||||||||||||||||||| Sbjct 1400 GAAGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACAAA 1350 >seq779604 Length=6485 Score = 89.7 bits (98), Expect = 6e-13 Identities = 218/324 (67%), Gaps = 20/324 (6%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || || |||||||| || | |||||||| || || || |||| ||||| ||| | | Sbjct 3529 AAGCCGTCCATCTCCGTGAGCAGCTGGTTGATGGTCTGCTCCCTCTCATCGTTCCC---C 3585 Query 16035 ATACC---ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 ||| ||| |||| || ||| | || ||||| ||||||||||| |||||||||||| Sbjct 3586 CCACCCATACCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATG 3645 Query 16092 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCC 16145 || || ||| || || | || ||||| |||| ||| || | |||||| Sbjct 3646 CAGGGCGCCTTGGCCTTGGCCTTC----TCGAAGAGGTCCC--TCACCCTGGACGCGCCC 3699 Query 16146 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 16205 || || || || | ||| || || | | |||| || || |||||| || | Sbjct 3700 ACGCCGACGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCC 3759 Query 16206 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 16265 || || || | ||| ||||| || || ||||| || || || ||| || |||| | | Sbjct 3760 TCCCCGGCGACGGCACGGGCCAGCAGTGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-G 3818 Query 16266 GCACCTCGT-GGAATCTTGGCGCC 16288 ||| | | | || |||||||| || Sbjct 3819 GCAGCCCTTGGGGATCTTGGCCCC 3842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606632770062400