Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq779604 120 3e-22 seq763138 114 1e-20 seq49623 95.1 1e-14 seq78186 93.3 5e-14 >seq779604 Length=6485 Score = 120 bits (132), Expect = 3e-22 Identities = 256/381 (67%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| |||||||| || ||||| ||||||||||| ||||| || | ||||||||| Sbjct 3528 GAAGCCGTCCATCTCCGTGAGCAGCTGGTTGATGGTCTGCTCCCTCTCATCGTTCCC--- 3584 Query 11652 CATACC---ACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGAT 11708 | ||| ||| || ||||| | | ||||| |||||||||||||||||||| ||||| Sbjct 3585 CCCACCCATACCGGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGAT 3644 Query 11709 ACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACC 11768 || || ||||| |||| ||||| || || | || | ||| || || || Sbjct 3645 GCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCACGCC 3704 Query 11769 TACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACC 11828 ||||| | ||| ||||| | | || | || | |||||| || | ||| || Sbjct 3705 GACGAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCC 3764 Query 11829 AGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 |||| ||| || || || || ||||| || || || || | || |||| ||| ||| Sbjct 3765 GGCGACGGCACGGGCCAGCAGTGTCTTCCCGGTCCCGGGCGGGCCGACGAGCAGGCAGCC 3824 Query 11889 ACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAAT 11948 |||||||||||| || ||| || || ||||||||||| || || | Sbjct 3825 CTTGGGGATCTTGGCCCCGAGCGTGGTGTACTTGTCGGGGTTCTTGAGGAAATCGACGAC 3884 Query 11949 CTCCTCAAGTTCCTCCTTGGC 11969 ||||| || || |||||| Sbjct 3885 CTCCTGCAGCTCGAGCTTGGC 3905 >seq763138 Length=14332 Score = 114 bits (126), Expect = 1e-20 Identities = 316/474 (67%), Gaps = 14/474 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 4723 CGGTCGAAGCGGCCGGGGCGGAGCAGCGCGGCGTCGAGGATTTCCGGCCGGTTCGTGGCG 4664 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || || || | | ||| | || | ||| |||||||| || ||||| |||||||| Sbjct 4663 GCGATCACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCTGGTTC 4604 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTACCG 11679 | ||||| |||||||| |||||| || || || | ||||| |||| | ||| Sbjct 4603 AGAGTCTGCTCACGCTCGTCGTTGCCCCCGCCGATGCC-CGTGCCG--CGCTGCCGGCCG 4547 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| || | ||||| |||| | |||| | ||| Sbjct 4546 ACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAAC 4487 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || || ||| ||| || || || ||||||||||| | ||| | | | | | Sbjct 4486 AGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCG-ACCCGGA 4428 Query 11800 CACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 || || | |||||| || | ||| || ||||| || || || || ||||| || Sbjct 4427 CAGCGAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCC 4368 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGAT-CTTGGCACCACTTCC--AAA 11915 ||| || || | || | || || | || |||||| || | | |||| || || Sbjct 4367 CGTCCCCGGCGGGCCGACCAGCAGCACCCCCTTGGGGATCCTCGCCCCCACCGCCGTGAA 4308 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | || || ||||||||| | ||| ||||||| | |||| |||||| Sbjct 4307 CTTG---TCCGGGAACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTGGC 4257 >seq49623 Length=10526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||||| ||||||||||| || ||||| |||||||| || || || |||||| Sbjct 6186 GTAGATGTTAGATGTGTAGGGTTCAAAGCACTCGTTGTTGCCAAGAATCTGACTAGTGGA 6127 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| |||||||| ||||||| |||||| ||||| Sbjct 6126 AGCAGTGGGCATTGGAGCCACCAGAAGAGAGTTTC 6092 >seq78186 Length=6745 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 878 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCC 819 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 818 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 759 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| | ||||| || || Sbjct 758 GCGAAGGCGACGATGCGCTCGGCGAA 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575588428276000