Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq78186 118 1e-21 seq1747981 113 5e-20 seq779604 93.3 5e-14 >seq78186 Length=6745 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 879 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 820 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 819 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 760 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | | ||||||||||||| Sbjct 759 GGCGAAGGCGACGATGCGCTCGGCGAAG 732 >seq1747981 Length=6417 Score = 113 bits (124), Expect = 5e-20 Identities = 200/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 1630 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 1571 Query 9255 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 | |||| ||||| |||||| | |||||||||||||||| ||||| || || || | Sbjct 1570 ACAACAATGATACCAGTGTTTCCCT--CAAAACCATCCATCTCAGTCAACAGCTGATTCA 1513 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTC 9366 ||| || |||| |||||| ||| | |||||| || || | |||| | | Sbjct 1512 GAGTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTCC 1459 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 | || |||||||| ||||||| || || || || || ||| || ||| | | | Sbjct 1458 CAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGA 1399 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||||||| ||||| | ||| || ||||||||||||||||||||||| Sbjct 1398 AGAGATCACGAACACGGGAGGCACCAACACCAACAAACATCTCCACAAA 1350 >seq779604 Length=6485 Score = 93.3 bits (102), Expect = 5e-14 Identities = 270/410 (66%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | ||||| || || ||||| ||||| | ||| | || ||||| Sbjct 3439 CGATCGAACCTCCCTGGCCGCAGAAGCGCCGAGTCAAGAACATCCGGCCTGTTGGTCGCA 3498 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| || | | ||| |||||| | || || |||||||| || | || |||| Sbjct 3499 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 3556 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTC 9366 | || || || |||| ||||| ||| | | ||| ||| |||| || ||| | | Sbjct 3557 TGATGGTCTGCTCCCTCTCATCGTTCCC---CCCACCCATACCGGCACCACGCTGCCTCC 3613 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAA 9426 | ||||| ||||||||||| |||||||| || || || || | ||| | || | Sbjct 3614 CGACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTCTCGA 3673 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486 |||| || | ||||| |||||||| || || || | ||| || || | | |||| Sbjct 3674 AGAGGTCCCTCACCCTGGACGCGCCCACGCCGACGAAGAGCTCGACGAACTCAGACGCGG 3733 Query 9487 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546 || || |||||| || | || || || | ||| ||||| || || ||||| | Sbjct 3734 CGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGGGCCAGCAGTGTCTTCC 3793 Query 9547 CCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 | || || ||| || |||| | |||| ||| | || |||||||| || Sbjct 3794 CGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCCCC 3842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576570388920800