Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq45179 260 2e-64 seq57095 246 3e-60 seq213450 156 5e-33 seq36335 123 3e-23 seq761979 100 3e-16 seq856698 93.3 5e-14 >seq45179 Length=9647 Score = 260 bits (288), Expect = 2e-64 Identities = 523/777 (67%), Gaps = 25/777 (3%) Strand=Plus/Minus Query 170792 TCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACT 170851 |||||||| ||| | || ||| |||||| |||||||| | || || | |||| ||| Sbjct 9638 TCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACT 9579 Query 170852 CATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAA 170911 |||||||||||| | | |||||||| | || | ||| | | ||||| || Sbjct 9578 AATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAA 9519 Query 170912 CGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACT 170971 ||| || ||||||||| | || || || || | | || || || |||||||| Sbjct 9518 TGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACT 9459 Query 170972 AGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTATAT 171031 || || |||||||||| || || || || || ||||| || ||||| | || Sbjct 9458 GGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCAT 9399 Query 171032 CTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGC 171091 | | ||| | ||||| || || || || ||||| |||||||| |||||||| ||||| Sbjct 9398 CCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 9339 Query 171092 AGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATT 171151 ||| || |||| | || | |||| || |||||||| ||||| || | ||||| | Sbjct 9338 CGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCT 9279 Query 171152 GTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAACATTCCGTGCCTT 171211 | ||| ||| | | || || |||| | |||||||| || Sbjct 9278 ATTTGAGGAC------GGTGATGGTGCAAATA---------------CCTTCCGTGCTTT 9240 Query 171212 TGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCACA 171271 | | || || || | ||||||||||| ||| | || || ||| | || ||||| || Sbjct 9239 TAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCA 9180 Query 171272 GATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTTCGTTCC 171331 || |||||| ||||||| || || ||| | | ||||| ||| ||||| | || || || Sbjct 9179 AATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACC 9120 Query 171332 TGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGC 171391 |||| ||| | |||| |||| || | || || | || || ||| | | || Sbjct 9119 CGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGC 9060 Query 171392 ATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTA 171451 || || ||||| || || || || | ||||| ||||| || || || ||||||||||| Sbjct 9059 CTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 9000 Query 171452 CACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCA--TCAGTTGACCAA 171509 ||| || ||||| ||| | || || ||||| | || |||||| || |||| || || Sbjct 8999 CACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAG--GATCAG 8942 Query 171510 CCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 || ||||| || | ||||||| || || || ||||| | || ||||| |||||| Sbjct 8941 CCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 8885 >seq57095 Length=8353 Score = 246 bits (272), Expect = 3e-60 Identities = 332/460 (72%), Gaps = 2/460 (0%) Strand=Plus/Minus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || ||||| |||||| | ||||| || |||| | || ||| | | ||| || || | Sbjct 463 GGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTAT 405 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| || || ||||| || ||||| || || || | || || || | ||||| Sbjct 404 CGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 345 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||| | ||||| ||||| || ||||||||||| || |||| | || || ||||| Sbjct 344 TTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGG 285 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | | ||||| |||||||| |||||||| ||| |||||||||| ||||| || |||||||| Sbjct 284 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGG 225 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 ||||||| || | | | | |||||| | ||||| | | || ||||| | | Sbjct 224 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 165 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| | | | | || ||||| |||||||| ||||||||| || || || Sbjct 164 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 105 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 || | ||||| ||||| ||||| | ||||| ||||||| || || ||||| Sbjct 104 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGA 45 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATG 169902 ||||||||| |||| ||||| |||||||||||||||||| Sbjct 44 TGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 5 Score = 116 bits (128), Expect = 4e-21 Identities = 182/259 (70%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| | | || ||||||||| || || ||||| || || ||||||||||||| Sbjct 8089 TTTGATACTATGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGC 8148 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| |||||| || || Sbjct 8149 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTT 8208 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | || || ||| | || || ||||| ||| || Sbjct 8209 GTAACTTCTTGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTA 8268 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || ||||||||||| || |||| |||| | | || | |||| || | || | Sbjct 8269 ACCGCAGCAGTTTCTACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 8323 Query 170764 GGGGACCTGAAGCACAAGG 170782 |||| || ||||||||||| Sbjct 8324 GGGGGCCAGAAGCACAAGG 8342 >seq213450 Length=3525 Score = 156 bits (172), Expect = 5e-33 Identities = 218/305 (71%), Gaps = 7/305 (2%) Strand=Plus/Plus Query 169819 GCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGT 169878 ||||| ||||| | || || ||||||| || || |||||||||||||| |||| Sbjct 3223 GCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGA 3282 Query 169879 ATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCAT 169938 ||||| |||||||||||||||||| | || || || ||||||| ||||| | |||||| Sbjct 3283 ATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCAT 3342 Query 169939 CCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCAT 169998 | || |||||| ||| ||||| || | |||| || || ||||| || |||||| Sbjct 3343 CTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCAT 3402 Query 169999 GGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTAT 170058 ||||| | || || || | ||||| ||||| || || | || || || | Sbjct 3403 GGTTC-CATGGTAGTT------TGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAG 3455 Query 170059 GGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTT 170118 ||||| || || || ||||| ||||| || || || || || || || || ||||| ||| Sbjct 3456 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 3515 Query 170119 GGTCG 170123 || || Sbjct 3516 GGCCG 3520 >seq36335 Length=20465 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 169825 TTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 169884 ||||| | ||||| ||||||| || || ||||||||||||| |||| ||||| Sbjct 3530 TTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCC 3471 Query 169885 GGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTC 169944 |||||||||||||||||| | || ||||| |||||||| ||||| || |||||||| ||| Sbjct 3470 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTC 3411 Query 169945 CACATGGCAGGAGTAG 169960 |||||| ||| |||| Sbjct 3410 CACATGTTAGGTGTAG 3395 >seq761979 Length=10221 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 169559 GTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTA 169618 ||||||| | |||| ||||| || ||||||||||| || |||| | || | | | Sbjct 447 GTTCTTTACTTTATGAAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGACGGTGA 388 Query 169619 TCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATG 169678 || | | ||||| |||||||| || ||| ||| | |||||||| ||||| || |||| Sbjct 387 TCAAATTGCACTTTTACCCAATTTGAAAAGTTGCATCGGTTGATGAGTGGTTATACAATG 328 Query 169679 GTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAA 169738 ||||||||||| || | | | || |||||| | ||||| | | || ||||| Sbjct 327 GTGGTCCTTATGAGCTAATTTTTTTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTT 268 Query 169739 GACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATA 169793 | ||| |||||| | | | | || |||| |||||| || ||||||||| Sbjct 267 GTGAGTAGGAACTTAGTTTCCGTCTGGGTATGCATCCTTGAATTGTTGTTGCATA 213 >seq856698 Length=257 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 170245 AATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGG 170304 ||||||||||| || |||||||| || |||||| | | || | | || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 170305 GGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACAC 170364 | |||| | | ||| | || ||| | ||||||||||| ||||||||| | ||||| ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 170365 AACTTCCCACTAGACCTAGCATCTGCTGA 170393 |||||||| |||||| |||| ||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566047148252800