Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq45179 457 1e-123 seq57095 262 4e-65 seq155648 150 2e-31 seq352821 125 8e-24 seq213450 113 5e-20 seq856698 111 2e-19 seq788035 100 3e-16 seq79754 95.1 1e-14 seq159272 87.8 2e-12 seq761979 84.2 2e-11 >seq45179 Length=9647 Score = 457 bits (506), Expect = 1e-123 Identities = 556/758 (73%), Gaps = 0/758 (0%) Strand=Plus/Minus Query 169562 GATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCA 169621 ||||| ||| ||||||||||| || ||||| |||| |||||||| || || || || Sbjct 9646 GATTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCT 9587 Query 169622 TTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGT 169681 |||||| | || ||||||||| | | || |||||| | || || | || | || Sbjct 9586 TTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGG 9527 Query 169682 CCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATC 169741 ||||||||||| || ||||||||||||| |||||||| ||||| ||| || ||||| Sbjct 9526 CCTTATAATGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATT 9467 Query 169742 TACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTC 169801 || ||||| || || || ||||||||||| || ||||| ||| |||| || || Sbjct 9466 TATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTT 9407 Query 169802 AGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATG 169861 | ||| | | ||| | |||||||| || || ||||||||||| ||||| || |||||| Sbjct 9406 CGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATG 9347 Query 169862 GGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAG 169921 || || || ||| | || |||| || |||| | ||||| ||||| | || ||||| Sbjct 9346 GGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAA 9287 Query 169922 AACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAG 169981 ||||| | | ||| |||||||| |||||||| ||| || ||| | | || || Sbjct 9286 AACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAA 9227 Query 169982 GAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATT 170041 | ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| ||| || Sbjct 9226 GCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTT 9167 Query 170042 GCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTT 170101 || ||||| || || |||||| | ||||| || ||| | ||||| || || | ||| | Sbjct 9166 GCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTA 9107 Query 170102 TGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTG 170161 |||| |||||||| | ||||| | ||||| || | ||||| || || || || Sbjct 9106 TGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTT 9047 Query 170162 AGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATC 170221 ||||| ||| | ||||| |||||||| ||||||||||| |||||||||||||| || Sbjct 9046 TCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATT 8987 Query 170222 CTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTC 170281 || || || || || ||||||| ||| ||||| || ||||| || |||||||| | Sbjct 8986 CTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTT 8927 Query 170282 ATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || ||||| || || ||||| || | || ||||| || Sbjct 8926 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 8889 >seq57095 Length=8353 Score = 262 bits (290), Expect = 4e-65 Identities = 358/497 (72%), Gaps = 2/497 (0%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 |||||| | ||| |||| ||| | || || || || |||| |||||||| || || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || || | ||| | |||||| ||||| || || |||||||| ||||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 || ||||||||||| || | ||| ||||| || || ||| | ||||| || || || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 |||||||| ||||| | ||||||||||| || || |||||||||| | ||| | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 168162 CTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCG 168221 | |||||| | | ||| | | || ||||| ||||| ||||||||| | || Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 168222 TTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGC 168281 | | |||||||| || ||||| ||||||||| || || || || || || || | ||| Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 168282 AGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 168341 || ||| | | || ||| | |||||||| || || ||||||| ||||| | ||||| Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 168342 CTCAGGAACATTCAACT 168358 ||| || || ||||||| Sbjct 26 CTCTGGTACTTTCAACT 10 Score = 102 bits (112), Expect = 9e-17 Identities = 174/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 ||||||||| | | | ||||| || || || | || |||||||| ||| | || || Sbjct 8101 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 8160 Query 169379 CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGG 169438 || ||| ||| | ||| | || || ||| | || || ||| | ||||| ||||| ||| Sbjct 8161 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8220 Query 169439 TACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCT 169495 || ||||| ||| | || |||| || || ||||| ||| ||| | || || || Sbjct 8221 TATACCCATGGATTGGCAAGTTCC---TATTTGGAAGGTTGTAATTTCTTAACCGCAGCA 8277 Query 169496 GTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCA 169555 || ||| ||||| | | | | |||||| || | | |||||||| ||||||||| Sbjct 8278 GTTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCA 8337 Query 169556 CAAGGCGATTT 169566 ||||| ||||| Sbjct 8338 CAAGGAGATTT 8348 >seq155648 Length=2022 Score = 150 bits (166), Expect = 2e-31 Identities = 218/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 169703 TCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCA 169762 |||||||| |||||| | ||||| || || ||||| || |||| || || || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 169763 TGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAA 169822 ||||||||||| || ||||| || || | || || | ||| | | ||| | ||| Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 169823 GGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGC 169882 ||||| || || ||||||||||| ||||| || |||||||| || || ||| | || ||| Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 169883 GGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGT 169942 | | ||| | ||||| ||||| | || ||||| ||||| | | ||| |||||| Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 169943 GAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATG 170002 || |||||||| ||| || ||| | | || || | ||||| |||||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 170003 GTCACTGC 170010 |||||||| Sbjct 1722 GTCACTGC 1715 >seq352821 Length=202 Score = 125 bits (138), Expect = 8e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 170112 CTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 170171 |||||||| | ||||| | ||||| || | ||||| || || || || ||||| | Sbjct 16 CTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAA 75 Query 170172 TCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATG 170231 || | ||||| |||||||| |||||||| || |||||||||||||| || || || || | Sbjct 76 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACG 135 Query 170232 AAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAG 170291 | || ||||||| ||| ||||| || ||||| || |||||||| | || ||||| | Sbjct 136 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 195 Query 170292 AAGAAGT 170298 | || || Sbjct 196 AGGAGGT 202 >seq213450 Length=3525 Score = 113 bits (124), Expect = 5e-20 Identities = 195/284 (69%), Gaps = 7/284 (2%) Strand=Plus/Plus Query 168304 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 168363 |||||||| | || ||||||| ||||| | |||||||| || || ||||||| ||| Sbjct 3247 GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 3306 Query 168364 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 168423 | || || || | |||||||| || | ||||||| || || ||| | || || ||| Sbjct 3307 ATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGTGTAGCT 3366 Query 168424 GGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTC 168483 || ||||| | || | || | ||||||||| || |||| || || Sbjct 3367 GGTGTATTCGTCGGTTCCCTATTCAATGCTATGCATGGTTCCATGGTAGTTTGATC---- 3422 Query 168484 GTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAA 168543 || || || ||||||| |||||| || | |||||||| || || ||||| ||| Sbjct 3423 ---AGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAAGAGGAA 3479 Query 168544 GAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTT 168587 || || || || || || || ||||||||||| || || || || Sbjct 3480 GAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATT 3523 >seq856698 Length=257 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 168706 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 168765 || |||||||| |||||||| || | ||||| |||| ||||| || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 168766 GCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACAC 168825 || ||| | | ||||| ||| || ||||||||||| |||||||| ||||| || ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 168826 AACTTCCCACTCGATCTTGCTGCTGCTGA 168854 |||||||| || || | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq788035 Length=1366 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 |||||||| || || ||||| |||||||| || ||||| || || ||| ||||||| | Sbjct 958 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATATT 1017 Query 168580 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 168639 || | || ||||||||||| ||| || |||||||| || || || ||||||||| | Sbjct 1018 GGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 1077 Query 168640 GCTGC 168644 ||||| Sbjct 1078 GCTGC 1082 >seq79754 Length=5746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 169941 GTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTA 170000 |||| | |||||||| ||| || ||| | | || || | ||||| |||||||| | Sbjct 4785 GTGATGATGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 4844 Query 170001 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTT 170060 |||||||||| ||||| || ||||| || ||||| | | |||| ||||| || || ||| Sbjct 4845 TGGTCACTGCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTT 4904 Query 170061 GGCTTCATTTTTTCATGTTGTTTGT 170085 || | ||||| || ||| | ||||| Sbjct 4905 GGTTACATTTCTTTATGCTATTTGT 4929 >seq159272 Length=944 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 169698 CATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGT 169757 || ||||||| || |||| | ||||| ||| || ||||| ||||||||||| || | Sbjct 308 CAATCTCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAAT 249 Query 169758 CCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCC 169817 | |||||| |||| | ||||| || |||| || || | ||| | | ||| Sbjct 248 CTGGTTGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCTTTTCT 189 Query 169818 TGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGG 169863 | |||||||| || || ||||| ||||| ||||| || |||||||| Sbjct 188 TCCAAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGG 143 >seq761979 Length=10221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 168031 TATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCAC 168090 |||| ||||| || ||||||||||| || | ||| |||| | | || | | ||| Sbjct 436 TATGAAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCAC 377 Query 168091 TTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTC 168150 || || || || || ||| ||||| | ||||||||||| || || |||||||||| Sbjct 376 TTTTACCCAATTTGAAAAGTTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 317 Query 168151 CAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAA 168210 | ||| | | || |||||| | | ||| | | || ||||| |||| | |||| Sbjct 316 GAGCTAATTTTTTTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAA 257 Query 168211 CTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGTTGCATA 168254 ||| | ||| | ||||||| ||| || || ||||||||| Sbjct 256 CTTAGTTTCCGTCTGGGTATGCATCCTTGAATTGTTGTTGCATA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561415671453600