Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq57095 262 4e-65 seq213450 188 8e-43 seq36335 122 1e-22 seq856698 111 2e-19 seq788035 98.7 1e-15 seq761979 91.5 2e-13 >seq57095 Length=8353 Score = 262 bits (290), Expect = 4e-65 Identities = 361/502 (72%), Gaps = 2/502 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| |||||| | || | ||||| | || ||||||||||| || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || || ||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | ||| || || | ||||||||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||| ||||| || |||| |||| || ||||| | ||||| |||||||| Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| || | | |||||||||||||| |||||||||||||| || | | | Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || || |||||| | |||||||| | | | | Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | ||||| ||||||| || || ||||||||||||||| ||||||| Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 168970 TTCTGGAACATTCAACTTCATG 168991 ||||| || |||||||| ||| Sbjct 26 CTCTGGTACTTTCAACTTTATG 5 >seq213450 Length=3525 Score = 188 bits (208), Expect = 8e-43 Identities = 218/293 (74%), Gaps = 8/293 (3%) Strand=Plus/Plus Query 168925 CCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAA 168984 |||||| ||||| || || ||||||||||||||| ||||||| ||||| || ||||| Sbjct 3241 CCCATT-GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 3299 Query 168985 CTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGG 169044 ||| ||| | ||||| || ||||||||||||| ||||||||| || || ||| ||| Sbjct 3300 CTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGG 3359 Query 169045 AGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATC 169104 ||||| ||| | |||| || || |||||| || ||||||||||| | ||| Sbjct 3360 TGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCATGGTTCCATGGTA----- 3414 Query 169105 TTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCA 169164 | | ||||| || |||||||| | ||||| || | |||||||| || ||||| Sbjct 3415 --GTTTGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCA 3472 Query 169165 AGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAA 169217 ||| ||||| || ||||||||||| || || ||||| || || || |||||| Sbjct 3473 AGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAA 3525 >seq36335 Length=20465 Score = 122 bits (134), Expect = 1e-22 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 168923 TACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTC 168982 ||||| ||||||| || || ||||||||||||| | ||||||| || || || ||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 168983 AACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCA 169042 ||||| ||| | |||||||| |||||||||||||| ||||||||||| ||||| ||| | Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 169043 GGAGTAG 169049 || |||| Sbjct 3401 GGTGTAG 3395 >seq856698 Length=257 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 169334 AACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGG 169393 || || || || || |||||||| || || ||| | | ||| | ||| ||| ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 169394 GGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCAC 169453 | ||| | | ||| | || |||||||||||||||||||||||||| ||||| |||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 169454 AACTTCCCACTAGACTTAGCATCTGCTGA 169482 |||||||| ||||||||||| ||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq788035 Length=1366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 169147 TGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTT 169206 ||||||||| || |||||||| |||||||| ||||| ||||| || || |||| || | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 169207 CGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 169266 || |||||||||||| ||||| ||||| |||||||| | | | ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 169267 AGCAGTGTTCCCAG 169280 || | ||| ||| Sbjct 1077 GGCTGCTTTCTCAG 1090 >seq761979 Length=10221 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 168635 GAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCA 168694 |||| ||| | || || || | |||| |||||| || ||||| ||||| || |||| Sbjct 460 GAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCTCTGGTGCTATTATTCCT 401 Query 168695 TCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAG 168754 |||| | | ||| | ||||| ||||||||||| ||| || | | |||||| Sbjct 400 ACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAGTTGCATCGGTTGATGAG 341 Query 168755 TGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCT 168814 |||||||| |||||||||||||| || | | | || |||||| || | || | || Sbjct 340 TGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTACACTTCTTACTTGGTGTAGCT 281 Query 168815 GCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGT 168874 || |||||| | ||| |||| | | | | || |||||| ||||| || | Sbjct 280 TGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGGGTATGCATCCTTGAATTGTT 221 Query 168875 GTTGCTTATTCAG 168887 ||||| |||| || Sbjct 220 GTTGCATATTGAG 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551611701321600