Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq45179 251 8e-62 seq57095 214 2e-50 seq213450 131 2e-25 seq36335 111 2e-19 seq856698 100 3e-16 seq1743757 89.7 6e-13 seq352821 89.7 6e-13 seq34999 82.4 9e-11 >seq45179 Length=9647 Score = 251 bits (278), Expect = 8e-62 Identities = 518/774 (67%), Gaps = 21/774 (3%) Strand=Plus/Minus Query 173215 CGTTGGTTACAACTCGGAGGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTC 173274 ||||||| ||| | || || ||||||| |||||||| | || || | |||| ||| Sbjct 9637 CGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTA 9578 Query 173275 ATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAAC 173334 |||||||||||| | || || ||||| | || | ||| | | ||||| || Sbjct 9577 ATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAAT 9518 Query 173335 GCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTTAATCTACCCACTA 173394 ||| || ||||||||| | || || || || | | || | || || ||||| Sbjct 9517 GCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTG 9458 Query 173395 GGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATC 173454 ||||| |||||||||| || || || || || ||||| || ||||| | ||| Sbjct 9457 GGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATC 9398 Query 173455 TTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCA 173514 | ||| | ||||| || || || || ||||| |||||||| |||||||| ||||| Sbjct 9397 CTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 9338 Query 173515 GGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTG 173574 ||| || |||| | || | ||||| || |||||||| ||||| || | ||||| | Sbjct 9337 GGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTA 9278 Query 173575 TATGAAGACACATCACAATATACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTT 173634 | ||| ||| ||| ||| | | || ||| | || ||| Sbjct 9277 TTTGAGGACGG------------TGATGGTGCAAAT---------ACCTTCCGTGCTTTT 9239 Query 173635 GATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAG 173694 | || || || | |||||||||||| ||| | || || ||| | || ||||| || Sbjct 9238 AACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAA 9179 Query 173695 ATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCT 173754 || |||||| | || ||||| || ||| | | ||||| ||| | ||| | || ||||| Sbjct 9178 ATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCC 9119 Query 173755 GTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCA 173814 |||| ||| | |||| | || || | || || | || || ||| | | || Sbjct 9118 GTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCC 9059 Query 173815 TACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTAC 173874 || |||||||| || || || || | ||||| |||||||| || || |||||||||||| Sbjct 9058 TATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTAC 8999 Query 173875 ACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACCA 173934 || || ||||| ||| | || || ||||| | || |||||| || || ||||| || Sbjct 8998 ACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCT 8939 Query 173935 CATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 ||||| || | |||| || || || || ||||| | || ||||| |||||| Sbjct 8938 CATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 8885 >seq57095 Length=8353 Score = 214 bits (236), Expect = 2e-50 Identities = 348/501 (69%), Gaps = 0/501 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||| | ||| |||| ||| | || | |||| | || ||||||||||| | Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | || ||||| || || ||| Sbjct 445 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCT 386 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | || || ||| | |||||||| | ||||| ||||| Sbjct 385 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 326 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || ||||||||||| || |||| | || || || || | ||||| ||||| || Sbjct 325 ATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATT 266 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | || ||||| ||||| |||||||||||||||||| || | | | Sbjct 265 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTT 206 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | || ||||| | |||||||||| | | | Sbjct 205 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 146 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||||||| ||||| |||| || |||| Sbjct 145 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 86 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || || | ||||| || || |||||||||||||| |||| ||| Sbjct 85 GTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATC 26 Query 172300 TCAGGTACGTTCAACTTTATG 172320 || ||||| |||||||||||| Sbjct 25 TCTGGTACTTTCAACTTTATG 5 Score = 116 bits (128), Expect = 4e-21 Identities = 182/259 (70%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| | | || ||||||||| || || |||||||| || | ||||||||||| Sbjct 8089 TTTGATACTATGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGC 8148 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||||||||| | || | || |||||||| ||| || || || Sbjct 8149 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTT 8208 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || || |||||||| ||||| | ||| ||| ||| | ||||| || || ||| Sbjct 8209 GTAACTTCTTGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTA 8268 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185 || |||||||| || || |||| |||| | | || | |||| || | || | Sbjct 8269 ACCGCAGCAGTTTCTACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 8323 Query 173186 GGGGACCTGAAGCACAAGG 173204 |||| || ||||||||||| Sbjct 8324 GGGGGCCAGAAGCACAAGG 8342 >seq213450 Length=3525 Score = 131 bits (144), Expect = 2e-25 Identities = 212/306 (69%), Gaps = 7/306 (2%) Strand=Plus/Plus Query 172236 TGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGG 172295 |||||| ||| | | || || | ||||| || || |||||||||||||| |||| Sbjct 3222 TGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGG 3281 Query 172296 TATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCA 172355 ||||| ||||| |||||||||||| | || || || ||||||| ||||| | ||||| Sbjct 3282 AATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCA 3341 Query 172356 TCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCA 172415 || || |||||| ||| ||||| || | || | || || ||||| || ||||| Sbjct 3342 TCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCA 3401 Query 172416 CGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTA 172475 ||||| | | | | | ||||| || || |||||| ||||| || | Sbjct 3402 TGGTTCCATGG-------TAGTTTGATCAGGGAAACTACTGAAAATGAATCCGCTAATGA 3454 Query 172476 CGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTT 172535 || ||||| || || ||||| ||||| || || || || || || || || ||||| || Sbjct 3455 GGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTT 3514 Query 172536 TGGTCG 172541 ||| || Sbjct 3515 TGGCCG 3520 >seq36335 Length=20465 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 || ||||||||||||| |||| ||||| ||||| |||||||||||| | || ||||| Sbjct 3500 TTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTCAACTTTATGATTGTATTCCAG 3441 Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAG 172378 |||||||| ||||| || |||||||| ||||||||| ||| |||| Sbjct 3440 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAG 3395 >seq856698 Length=257 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 172663 AACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGG 172722 || |||||||| ||||||||||| || || ||| | | ||| || || ||| ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 172723 GGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACAC 172782 | ||| | | ||| | || ||||| ||||||||||| ||||||||| | ||||| ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 172783 AACTTCCCATTAGACCTTGCTTCTG 172807 |||||||| ||||| | ||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTG 147 >seq1743757 Length=8691 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || ||||| ||| | || |||||||| |||||||| ||||| || || Sbjct 2091 TGGAGCAGATGTTTGCCATCTTAACCTTCACAAGACATTTTGTATTCCCCATGGTGGAGG 2032 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| | || ||||||||||| Sbjct 2031 TGGTCCTGGCATGGGCCCTATTGGTGT 2005 >seq352821 Length=202 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 173812 GCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTC 173871 || || |||||||| || || || || | ||||| |||||||| || || || |||||| Sbjct 51 GCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTC 110 Query 173872 TACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAA 173931 ||||| || ||||| ||| | || || ||||| | || |||||| || || ||||| Sbjct 111 TACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAG 170 Query 173932 CCACATGAGAACTTCGTATTTCCAGAAGAAGT 173963 || ||||| || | |||| || || || || Sbjct 171 CCTCATGAAAATCTTATATTCCCTGAGGAGGT 202 >seq34999 Length=3418 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/172 (71%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 172947 TTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 173006 ||| | |||| | | || ||||||||| || || |||||||| || | |||||||| Sbjct 482 TTGATCTGATACTATGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTC 541 Query 173007 TGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTA-GGAACTA 173065 ||| || || || | ||||||||||| || || | || |||||||| || |||| | Sbjct 542 TGGCCTATTGCTCTTTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTATAGGGAAAAA 601 Query 173066 CCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGG 173117 | || || || |||||||| |||| | ||| ||| ||| | ||||| Sbjct 602 AAATTGTAACTTCTTGGTATACCCATGAATTGGCAAGTTCCTATTTGGAAGG 653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574684649211200