Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq45179 432 4e-116 seq57095 246 3e-60 seq155648 187 3e-42 seq213450 165 9e-36 seq159272 114 1e-20 seq788035 102 9e-17 seq36335 102 9e-17 seq856698 100 3e-16 seq79754 95.1 1e-14 seq156267 86.0 7e-12 seq352821 82.4 8e-11 >seq45179 Length=9647 Score = 432 bits (478), Expect = 4e-116 Identities = 545/746 (73%), Gaps = 2/746 (0%) Strand=Plus/Minus Query 163894 CAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTC 163953 ||| | || || || |||| |||||| || |||||||| || ||||| || || |||||| Sbjct 9628 CAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTC 9569 Query 163954 ATGCTTCGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCCTACAATGCGATTGC 164012 ||| | || ||||||||||||||||| ||| || | | | || || ||||| || | Sbjct 9568 ATGTTACGCCAATTTGAACTTGCTCGGTCTG-TTCAATTGCGGCCTTATAATGCAATCTC 9510 Query 164013 TTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATC 164072 ||||||||||| |||||||| || ||| ||| || || || || || ||||| ||||| Sbjct 9509 ATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATC 9450 Query 164073 AAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCT 164132 |||||||||| || || |||||| || ||||| || || ||||| || | ||| | Sbjct 9449 TGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTT 9390 Query 164133 TCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 164192 |||||||||||||| ||||| |||||||| || ||||||||||||||||| || || | Sbjct 9389 CCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATT 9330 Query 164193 AGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGA 164252 ||||| || |||||| |||||||| |||| || || ||||| || | | ||| || Sbjct 9329 AGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGA 9270 Query 164253 TGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTC 164312 || || ||||| ||||| || ||| | | || || | ||||| |||||||| Sbjct 9269 CGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 9210 Query 164313 TATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCG 164372 ||||||||||| |||||||| ||||| || ||||| |||||||| ||||| || || || Sbjct 9209 AATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACG 9150 Query 164373 GTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGG 164432 ||| | ||||| || ||| | ||||| || || | ||| |||||| ||||||| Sbjct 9149 TTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGG 9090 Query 164433 CATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGC 164492 | | ||||| | ||||| || | ||||| || || ||||| || || || | || Sbjct 9089 CGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGC 9030 Query 164493 AGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACT 164552 ||| ||||||||||| || ||||||||||| ||||| || || | || ||||| || | Sbjct 9029 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTAT 8970 Query 164553 CCGTGCATGGTTAGCACCAGTTGACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGT 164612 ||||| ||| | ||| | || ||||| ||| || | ||||| || || || Sbjct 8969 TCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 8910 Query 164613 ACTGCCGAGAGGTAATGCGCTTTAAT 164638 || || | || || || ||||||| Sbjct 8909 TCTACCACGTGGAAACGCTCTTTAAT 8884 >seq57095 Length=8353 Score = 246 bits (272), Expect = 3e-60 Identities = 362/507 (71%), Gaps = 4/507 (1%) Strand=Plus/Minus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||| | ||| ||||| || | || || || || |||| |||||||| || || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || || | ||| | ||||| ||||| || || |||||||| ||||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 || ||||||||||| || |||| |||| || || || | ||||| || || || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 | |||||| | | || | | || ||||| ||||| |||||||| || ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 ||| |||||||| || ||||| ||| || ||||| || || ||||||||||| || | | Sbjct 146 TCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 88 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| || | || ||| | |||||||| || ||||| | ||||| || || | Sbjct 87 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAA 28 Query 162863 TCAGTGGTACATTCAACTACATGCTTG 162889 || |||||| ||||||| ||| ||| Sbjct 27 TCTCTGGTACTTTCAACTTTATGATTG 1 Score = 122 bits (134), Expect = 9e-23 Identities = 179/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 163631 TGGATGACTGGCTTAAG-CGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTT 163689 ||||||||||| ||| | | || |||||||| ||| | || |||||||| || | || Sbjct 8099 TGGATGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTC 8157 Query 163690 CTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCG 163749 |||| ||||||| | || | || || ||| |||| || |||||||| || || || Sbjct 8158 TTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCT 8217 Query 163750 TGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTCACAGCGGCT 163809 ||||| ||||||||| |||||| ||||||| | || ||| |||||| | || || || Sbjct 8218 TGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTAACCGCAGCA 8277 Query 163810 GTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCT 163869 || || || ||||| | | | | || ||| | | || || ||||| || || || Sbjct 8278 GTTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCA 8337 Query 163870 CAGGGCGATTT 163880 || || ||||| Sbjct 8338 CAAGGAGATTT 8348 >seq155648 Length=2022 Score = 187 bits (206), Expect = 3e-42 Identities = 226/308 (73%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 164017 TCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGT 164076 |||||||| |||||| | || ||| || || || || || || | ||| ||||| || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 164077 TGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAA 164136 |||||||| || || |||||| |||||| | || || ||||| || | ||| | ||| Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 164137 GGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGC 164196 ||||||||||| ||||| |||||||| || ||||||||||||||||| || || ||||| Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 164197 GGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGA 164256 | | ||| || |||||||| |||| || || ||||| || | | ||| || || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 164257 GAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATG 164316 || ||||| ||||| || ||| | | || || | ||||| |||||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 164317 GTCACTGC 164324 |||||||| Sbjct 1722 GTCACTGC 1715 >seq213450 Length=3525 Score = 165 bits (182), Expect = 9e-36 Identities = 222/308 (72%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 162802 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGT 162861 || || ||| || | || || | |||||||| || ||||| | ||||| || || Sbjct 3223 GCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGA 3282 Query 162862 ATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAT 162921 ||| |||||| ||||||| ||| |||| || || ||||||||||||| | |||||| Sbjct 3283 ATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCAT 3342 Query 162922 CCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCAC 162981 | || |||||||| ||||| || ||||| |||| ||||| || |||| ||| ||||| Sbjct 3343 CTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCAT 3402 Query 162982 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTAT 163041 ||||| |||| | || | || | || || ||||||| ||| || || | Sbjct 3403 GGTTCCATGGT---AGTTTGA----TCAGGGAAACTACTGAAAATGAATCCGCTAATGAG 3455 Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTC 163101 |||||||| || |||||||| |||||||| || || || || || || |||||||| || Sbjct 3456 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 3515 Query 163102 GGTCGTTT 163109 || || || Sbjct 3516 GGCCGATT 3523 >seq159272 Length=944 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 164015 TCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAA 164074 ||||||| || |||| | || ||| ||| || || || ||||| || || ||||| Sbjct 305 TCTCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTG 246 Query 164075 GTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTC 164134 |||||||| | || | |||||| | ||||| || || ||||| || | ||| | | Sbjct 245 GTTGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCTTTTCTTCC 186 Query 164135 AAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 164194 ||||||||||||| ||||| |||||||| || |||||||||||| ||| | | || ||| Sbjct 185 AAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGATTTGATAGAGTATTAG 126 Query 164195 G 164195 | Sbjct 125 G 125 >seq788035 Length=1366 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 163041 TGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTT 163100 ||||||||| || |||||||| ||||| || || ||||| || || || ||||||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 163101 CGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 163160 || | || |||||||||||||| || |||||||| ||||| || ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 163161 TGCTGC 163166 ||||| Sbjct 1077 GGCTGC 1082 >seq36335 Length=20465 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 162808 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGT 162867 ||| || | || ||| | |||||||| || ||||| | |||| || || ||| Sbjct 3530 TTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCC 3471 Query 162868 GGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTC 162927 ||||| ||||||| ||| |||| ||||| |||||||||||||| || |||||||| ||| Sbjct 3470 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTC 3411 Query 162928 CACATGTTGGGTGT 162941 |||||||| ||||| Sbjct 3410 CACATGTTAGGTGT 3397 >seq856698 Length=257 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 163228 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 163287 || |||||||| |||||||| || | ||||| |||| ||||| || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 163288 GCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCAC 163347 || || | | |||||||| | ||||||||||| ||||| || || ||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 163348 AACTTCCCACTTGACCTGGCAGCTG 163372 |||||||| || ||| | || |||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTG 147 >seq79754 Length=5746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 164263 GCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 164322 ||||| ||||| || ||| | | || || | ||||| |||||||| ||||||||| Sbjct 4793 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 4852 Query 164323 GCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCAT 164382 || ||||| || ||||| || ||||| | |||||| ||||| || || | ||| | ||| Sbjct 4853 GCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACAT 4912 Query 164383 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 164419 || || ||| | ||||| | || | ||| |||||| Sbjct 4913 TTCTTTATGCTATTTGTACTCGTCACTGGTTTATGGA 4949 >seq156267 Length=5709 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 162919 CATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATG 162978 ||||| ||||||||||| ||||| || ||||| ||||| ||||| || |||||||| ||| Sbjct 5391 CATCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATG 5332 Query 162979 CACGGTTCTTTGGTTACATC 162998 || ||||| ||||| || || Sbjct 5331 CATGGTTCCTTGGTAACCTC 5312 >seq352821 Length=202 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 164426 CTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGA 164485 |||||||| | ||||| | ||||| || | ||||| || || ||||| || || | Sbjct 16 CTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAA 75 Query 164486 TTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACG 164545 | | ||||| ||||||||||| || || |||||||| ||||| || || | || |||| Sbjct 76 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACG 135 Query 164546 AAGGACTCCGTGCATGGTTAGCA 164568 | || | ||||| ||| | ||| Sbjct 136 AGGGTATTCGTGCGTGGATGGCA 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544909976284000