Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq57095 237 2e-57 seq213450 168 1e-36 seq36335 111 2e-19 seq856698 109 8e-19 seq761979 96.9 5e-15 >seq57095 Length=8353 Score = 237 bits (262), Expect = 2e-57 Identities = 343/484 (71%), Gaps = 0/484 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| |||||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 484 ACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 425 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| || ||||| || || || Sbjct 424 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 365 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| ||||||||||| | ||||| ||||| || |||||||||||| || | Sbjct 364 CGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATT 305 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || |||||||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 304 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 245 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | ||||||||||| |||| | || || | | |||||| | ||||| | Sbjct 244 GAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 185 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || || || | ||||||||||| || | | | |||||| | |||||||| Sbjct 184 GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATT 125 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||| || ||| | | || || | Sbjct 124 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 65 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || || ||||||| |||||| | ||||||||||| || ||||||| ||| Sbjct 64 GGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 5 Query 215795 TTTG 215798 ||| Sbjct 4 ATTG 1 >seq213450 Length=3525 Score = 168 bits (186), Expect = 1e-36 Identities = 211/287 (74%), Gaps = 8/287 (3%) Strand=Plus/Plus Query 215729 CCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAAC 215788 ||||| ||||| || || ||||||| |||||| | ||||||||||| || |||||| Sbjct 3242 CCATT-GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 3300 Query 215789 TACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGT 215848 | ||| |||| || ||| | ||||||||||| | ||||| | ||| |||||||||||| Sbjct 3301 TTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGT 3360 Query 215849 GTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCT 215908 || |||||||| |||| ||||| | ||| ||| ||||| ||||| | || || Sbjct 3361 GTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCATGGTTC-CATGGTA----- 3414 Query 215909 TCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAA 215968 | | ||||| || || ||||| | ||||| || | |||||||| || || ||| Sbjct 3415 -GTTTGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAA 3473 Query 215969 GAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCG 216015 ||||| || || || || || || ||||| || ||||| ||||| || Sbjct 3474 GAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCG 3520 >seq36335 Length=20465 Score = 111 bits (122), Expect = 2e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || ||||||| ||||| | |||||||| || || ||||||| ||| |||| |||||| Sbjct 3500 TTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTCAACTTTATGATTGTATTCCAG 3441 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGT 215850 || ||||||||||| || ||||| |||||||||||||||||||| Sbjct 3440 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGT 3397 >seq856698 Length=257 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 216137 AACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGG 216196 || |||||||| |||||||| ||||| || || ||| |||||| ||||||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 216197 GCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCAC 216256 || || | | ||| | || |||||||||||||||||||| || ||||| |||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 216257 AACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 |||||||| ||||||| ||||||| |||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGAA 152 >seq761979 Length=10221 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 215444 GTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCA 215503 ||| || |||||||| | |||| ||||| || |||||||||||| || | |||| ||| Sbjct 454 GTTTCTAGTTCTTTACTTTATGAAAACAATATTATCTCTGGTGCTATTATTCCTACTTCG 395 Query 215504 AACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTC 215563 | | ||| ||| ||||| ||||| || || ||| ||| | ||||| || ||| | Sbjct 394 ACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAGTTGCATCGGTTGATGAGTGGTTA 335 Query 215564 TACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 ||||||||||| |||| | || || | || |||||| | ||||| Sbjct 334 TACAATGGTGGTCCTTATGAGCTAATTTTTTTACACTTCTTACTTGGT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728145708961600