Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq45179 493 2e-134 seq57095 257 2e-63 seq213450 168 8e-37 seq155648 168 8e-37 seq856698 134 2e-26 seq159272 123 3e-23 seq36335 111 2e-19 seq788035 96.9 4e-15 seq156267 91.5 2e-13 seq761979 89.7 6e-13 seq769592 84.2 3e-11 >seq45179 Length=9647 Score = 493 bits (546), Expect = 2e-134 Identities = 567/764 (74%), Gaps = 0/764 (0%) Strand=Plus/Minus Query 183436 GACTTTNNNCGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCC 183495 || ||| || ||||| ||| | || || || |||| |||||| || |||||||| || Sbjct 9646 GATTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCT 9587 Query 183496 TTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGT 183555 ||||| || || ||||||||| | || || |||||||||||||| | || | || Sbjct 9586 TTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGG 9527 Query 183556 CCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATC 183615 ||||| ||||| || | ||||||||||| |||||||||||||| |||||||||||| Sbjct 9526 CCTTATAATGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATT 9467 Query 183616 TATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 183675 ||||||||||| || ||| ||||||||||| || ||||| || |||||||| || ||| Sbjct 9466 TATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTT 9407 Query 183676 AGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATG 183735 ||||| | | ||| | || || || || || |||||||| ||||| || ||||||||| Sbjct 9406 CGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATG 9347 Query 183736 GGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAG 183795 |||||||| || || |||| | || || || | ||||| ||||| | || ||||| Sbjct 9346 GGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAA 9287 Query 183796 AATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAA 183855 || || | | ||| || || || ||||| || ||| || ||| | | |||||| Sbjct 9286 AACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAA 9227 Query 183856 GAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTT 183915 | ||||| || ||||| ||||| || || || || || ||||| |||||||| || ||| Sbjct 9226 GCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTT 9167 Query 183916 GCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTT 183975 || ||| |||||| |||||||| || ||||||||| | ||||| || |||| ||| | Sbjct 9166 GCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTA 9107 Query 183976 TGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTA 184035 ||| | | |||||||| | |||| | ||||| || | ||||| ||||| ||||| Sbjct 9106 TGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTT 9047 Query 184036 AGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATA 184095 || || ||| | ||||| |||||||| ||||||||||| |||||||| || || || Sbjct 9046 TCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATT 8987 Query 184096 CTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTT 184155 ||| | || || || | ||||| ||| | ||| || ||||| || ||||| ||| || Sbjct 8986 CTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTT 8927 Query 184156 ATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||| || |||||||| |||| | || || ||||||| ||| Sbjct 8926 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 8883 >seq57095 Length=8353 Score = 257 bits (284), Expect = 2e-63 Identities = 347/478 (73%), Gaps = 8/478 (2%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 |||||||| || |||| ||||| ||||| |||||||||| || | ||| | ||||| Sbjct 478 AATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 419 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || | || ||| | || || ||||| || ||||| || ||||| || || Sbjct 418 -TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 360 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 || || ||||||| | | ||||| ||||| || |||||||||||| || | || | Sbjct 359 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTAC 300 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || || || | ||||| |||||||| ||||||||||| || |||||||||| Sbjct 299 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 240 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || || |||||||||| | || ||||| | |||||| | | || | || || Sbjct 239 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 183 Query 182120 ---CTACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 || ||||| ||||||||||||||| || ||| | |||||||| || ||||| Sbjct 182 TTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGC 123 Query 182177 TGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGG 182236 ||| ||||| || ||||| || || || || ||||||| ||||| | || ||| | || Sbjct 122 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 63 Query 182237 TCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATG 182294 |||||| || || |||| ||||| | |||||||| || || ||||||| |||| Sbjct 62 TCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 5 Score = 114 bits (126), Expect = 2e-20 Identities = 177/250 (71%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | | || || || || ||||| || |||||||| || | || || Sbjct 8101 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 8160 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 8161 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8220 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 183371 |||||||||||| | || ||||||| | |||||| ||| |||||| || ||||| || Sbjct 8221 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCAGT 8279 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || ||||| | | | | || ||| | || |||| ||||| || || | || Sbjct 8280 TTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACA 8339 Query 183432 AGGGGACTTT 183441 ||| || ||| Sbjct 8340 AGGAGATTTT 8349 >seq213450 Length=3525 Score = 168 bits (186), Expect = 8e-37 Identities = 224/310 (72%), Gaps = 7/310 (2%) Strand=Plus/Plus Query 182209 CTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCG 182268 ||||||| ||||| | || || | |||||||| || || |||| ||||| | | Sbjct 3221 CTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAG 3280 Query 182269 GAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGC 182328 ||||||| || || ||||||| |||| | || || || | ||||||||||| |||||| Sbjct 3281 GAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGC 3340 Query 182329 ATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGC 182388 ||| || |||||||| |||||||| |||||||||| ||||| || || | ||| |||| Sbjct 3341 ATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGC 3400 Query 182389 ACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACT 182448 | ||||| |||| | || | || | || || ||||| | || || || Sbjct 3401 ATGGTTCCATGGT---AGTTTGA----TCAGGGAAACTACTGAAAATGAATCCGCTAATG 3453 Query 182449 ATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACT 182508 | |||||||| || |||||||| |||||||| ||||| || || || || ||||| || | Sbjct 3454 AGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATT 3513 Query 182509 TCGGTCGTTT 182518 | || || || Sbjct 3514 TTGGCCGATT 3523 >seq155648 Length=2022 Score = 168 bits (186), Expect = 8e-37 Identities = 222/308 (72%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 183577 TCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCA 183636 |||||||| |||||| ||||||| ||||||||||| ||||||| ||| || ||| Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 183637 TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAG 183696 ||||||||||| || ||||| || || ||| | || || ||||| | | ||| | || Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 183697 GGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGA 183756 || || || || |||||||| ||||| || ||||||||||||||||| || || |||| Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 183757 GGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGA 183816 | | || | | ||||| ||||| | || ||||| || || | | ||| || || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 183817 GAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATG 183876 || ||||| || ||| || ||| | | ||||||| ||||| || ||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 183877 GTTACAGC 183884 || || || Sbjct 1722 GTCACTGC 1715 >seq856698 Length=257 Score = 134 bits (148), Expect = 2e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 182637 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGG 182696 || |||||||| |||||||| || | ||||| |||| ||||| || |||| |||||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 182697 GCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 182756 || ||| | | ||||||||| |||||||||||||| |||||||| ||||| || ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 182757 AACTTCCCACTAGATCTTGCTGCTGCTGA 182785 |||||||| ||||| | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq159272 Length=944 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 183575 TCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTT 183634 ||||||| || |||| | |||||| |||||||||||| || ||||| || || ||| Sbjct 305 TCTCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTG 246 Query 183635 CATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTC 183694 |||||| ||||| ||||||| || ||||||| || ||| ||||| | | ||| | | Sbjct 245 GTTGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCTTTTCTTCC 186 Query 183695 AGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 183754 | || || || || ||||| || ||||| || |||||||||||| ||| | | || ||| Sbjct 185 AAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGATTTGATAGAGTATTAG 126 Query 183755 G 183755 | Sbjct 125 G 125 >seq36335 Length=20465 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 182217 TTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCA 182276 ||||| | || ||| | |||||||| || || |||| |||| | |||||||| Sbjct 3530 TTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCC 3471 Query 182277 GGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTC 182336 || || ||||||| |||| | || ||||| || ||||||||||| ||||||||||| ||| Sbjct 3470 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTC 3411 Query 182337 CACATGTTGGGTGTAG 182352 |||||||| ||||||| Sbjct 3410 CACATGTTAGGTGTAG 3395 >seq788035 Length=1366 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 182450 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTT 182509 ||||||||| || |||||||| ||||| || |||||||| || || || |||| || | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 182510 CGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 182569 || | || ||||||||||| || || |||||||| ||||| || ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 182570 TGCTGC 182575 ||||| Sbjct 1077 GGCTGC 1082 >seq156267 Length=5709 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 182328 CATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATG 182387 ||||| ||||||||||| |||||||| ||||||||||| ||||| || || ||||| ||| Sbjct 5391 CATCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATG 5332 Query 182388 CACGGTTCTTTGGTTACATC 182407 || ||||| ||||| || || Sbjct 5331 CATGGTTCCTTGGTAACCTC 5312 >seq761979 Length=10221 Score = 89.7 bits (98), Expect = 6e-13 Identities = 186/272 (68%), Gaps = 14/272 (5%) Strand=Plus/Minus Query 181921 ATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCT 181980 |||| || | ||| | |||| || || |||| | | |||| ||||| || |||| Sbjct 477 ATATTGATGATATTCATGAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCT 418 Query 181981 CTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTC----TTCACTTCTACCCAATCTGG 182036 |||||||| || | || | || | ||| || || | ||||| |||||||| || Sbjct 417 CTGGTGCTATTATTCC-TACTTCGACGG---TGATCAAATTGCACTTTTACCCAATTTGA 362 Query 182037 GAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTC 182096 ||| ||| || ||||||||||| | || || |||||||||| | || || |||| Sbjct 361 AAAGTTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTA 302 Query 182097 CACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAGTGGGAACTTTCTTACCGC 182153 |||||| | | || | || || || ||||| |||||| ||||||| || ||| Sbjct 301 CACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGT 245 Query 182154 TTAGGTATGCGTCCCTGGATCTGTGTAGCATA 182185 | ||||||| ||| || || ||| ||||| Sbjct 244 CTGGGTATGCATCCTTGAATTGTTGTTGCATA 213 >seq769592 Length=4310 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 183580 GGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGG 183639 || || |||||||||||||| | ||||| |||| ||||||||||| || ||| ||| Sbjct 1362 GGCCCAATTGCTGTTTTTGTTTCTATATTCTTTATTTATCCACTGGGGCAATCTAGTTGG 1421 Query 183640 TTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTT 183675 |||||||| || ||||| || ||||| || || ||| Sbjct 1422 TTCTTTGCGCCGAGTTTTGGCGTAGCGGCGATATTT 1457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597791996996000