Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq57095 242 4e-59 seq213450 141 1e-28 seq36335 107 2e-18 seq788035 100 3e-16 seq761979 100 3e-16 seq856698 93.3 5e-14 >seq57095 Length=8353 Score = 242 bits (268), Expect = 4e-59 Identities = 349/492 (71%), Gaps = 0/492 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | || || | || | || ||||||||||| ||||||||||| Sbjct 496 TGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 437 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || |||||||| || || || || || Sbjct 436 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 377 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | ||||| || | ||||| ||||| || |||||| Sbjct 376 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 317 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || ||||| | ||||| || || ||||||||||| Sbjct 316 GGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 257 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||||||||| || || |||||||||||| | || || | | |||||| Sbjct 256 GCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTC 197 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 196 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 137 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 136 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 77 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || ||| | ||||| ||| || || || || |||||| |||| ||||| ||||| Sbjct 76 ATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACT 17 Query 170179 TTTAACTTCATG 170190 || ||||| ||| Sbjct 16 TTCAACTTTATG 5 >seq213450 Length=3525 Score = 141 bits (156), Expect = 1e-28 Identities = 212/302 (70%), Gaps = 7/302 (2%) Strand=Plus/Plus Query 170107 GCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGT 170166 ||||| ||||| | || || | ||||| ||| || || || || |||||| |||| Sbjct 3223 GCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGA 3282 Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 ||||| ||||| || ||||| ||| | ||||| || ||||||||||||| ||||||| Sbjct 3283 ATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCAT 3342 Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCAC 170286 | ||| || ||| ||| || |||||| | |||| || | || ||| || ||||| Sbjct 3343 CTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCAT 3402 Query 170287 GGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTAT 170346 ||||| | ||| | | ||||| || || || || || || || || | Sbjct 3403 GGTTCCATGGTA-------GTTTGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAG 3455 Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || |||||||| || ||||| ||||| || || || ||||| || || ||||| || ||| Sbjct 3456 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 3515 Query 170407 GG 170408 || Sbjct 3516 GG 3517 >seq36335 Length=20465 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 170113 TTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCA 170172 ||||| | || ||| | ||||| ||| || || || || |||| | |||| ||||| Sbjct 3530 TTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCC 3471 Query 170173 GGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTC 170232 ||||| || ||||| ||| | |||||||| |||||||||||||| |||||||| |||||| Sbjct 3470 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTC 3411 Query 170233 CATATGGCAGGGGT 170246 || ||| ||| || Sbjct 3410 CACATGTTAGGTGT 3397 >seq788035 Length=1366 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 170346 TGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTT 170405 ||| |||||||| || ||||| |||||||| || |||||||| || || |||| || | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 170406 TGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCT 170465 ||| | | ||||||||||||||||| |||||||| |||| | | ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 170466 TGCTACATTC 170475 ||| | ||| Sbjct 1077 GGCTGCTTTC 1086 >seq761979 Length=10221 Score = 100 bits (110), Expect = 3e-16 Identities = 172/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 169834 GAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCA 169893 |||| ||| | |||| || | |||| ||||| || ||||||||||| || |||| Sbjct 460 GAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCTCTGGTGCTATTATTCCT 401 Query 169894 TCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAG 169953 |||| | | ||| | ||||| || || ||||| ||| ||| | | |||||| Sbjct 400 ACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAGTTGCATCGGTTGATGAG 341 Query 169954 TGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCT 170013 ||||| || || |||||||||||| | || || | || |||||| | | || | || Sbjct 340 TGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTACACTTCTTACTTGGTGTAGCT 281 Query 170014 GCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGT 170073 || |||||| | ||| |||||| | |||| | ||||||| |||||| || | Sbjct 280 TGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGGGTATGCATCCTTGAATTGTT 221 Query 170074 GTAGCATATT 170083 || ||||||| Sbjct 220 GTTGCATATT 211 >seq856698 Length=257 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 170533 AATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGG 170592 ||||| || || |||||||| || | || ||| | ||| || || ||| ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 170593 GCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACAC 170652 || || | | ||| | || ||||| |||||||||||||||||||| |||||||| ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 170653 AACTTCCCACTTGACTTGGCAACTGCTGA 170681 |||||||| || ||||| || ||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569599719248000