Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq57095 250 3e-61 seq213450 187 3e-42 seq788035 105 7e-18 seq36335 95.1 1e-14 seq856698 82.4 9e-11 >seq57095 Length=8353 Score = 250 bits (276), Expect = 3e-61 Identities = 361/507 (71%), Gaps = 2/507 (0%) Strand=Plus/Plus Query 84451 CAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTT 84510 ||| ||| ||||||| || || ||||| || | ||||| |||||||| || |||| Sbjct 1 CAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTT 60 Query 84511 GCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAA 84570 | || | ||| || | | ||| ||||||| || |||||||| ||||| || || |||| Sbjct 61 GACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAA 120 Query 84571 CACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAG 84630 || ||||| || |||||||| ||||| | ||||||||| ||||||||||| ||| Sbjct 121 CAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAAC 180 Query 84631 CAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCC 84690 | | |||||| | |||||| | |||| || | |||||| |||||||| |||| || Sbjct 181 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACC 240 Query 84691 ATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGG 84750 | || || | | ||| ||||||||||| || || || || | || || || ||| | Sbjct 241 ACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAG 300 Query 84751 ATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCT 84810 |||| | |||||||| || || |||||||| || | | |||||||| || |||| Sbjct 301 TAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCT 360 Query 84811 CACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACA 84869 |||| ||||| |||||||| ||||| || ||| | | ||| || || || || ||||| | Sbjct 361 CACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-A 419 Query 84870 GTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTG 84929 || || | | || || || ||||| | | || ||||| || | || | ||| || Sbjct 420 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTT 479 Query 84930 TTAGTGGAGGTGACCCAATCACAGAAG 84956 | |||| || | ||| | |||||| Sbjct 480 TCAGTGCTAGTTATCCAGTTGCAGAAG 506 >seq213450 Length=3525 Score = 187 bits (206), Expect = 3e-42 Identities = 226/307 (74%), Gaps = 7/307 (2%) Strand=Plus/Minus Query 84234 CGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTG 84293 || || || || || |||||||| |||||||||||||| || || |||||||| || ||| Sbjct 3520 CGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTG 3461 Query 84294 TAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGT 84353 ||||| | || || ||||||| |||||||| | ||| | || | || | Sbjct 3460 TAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCA------AACTACCATG- 3408 Query 84354 GAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGA 84413 ||||||||||| ||| |||||| | || ||||||||||||| || || ||||||||| Sbjct 3407 GAACCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACATGTGA 3348 Query 84414 AAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCT 84473 || ||||||||| |||||| || || | ||| || |||| ||| ||||||| || || Sbjct 3347 AATAGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGTACCA 3288 Query 84474 GAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAAT 84533 ||||| || | ||||| |||||||| || ||||| || | || || | | ||| Sbjct 3287 GAGATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCAAGAAA 3228 Query 84534 ACAGCAG 84540 ||||||| Sbjct 3227 ACAGCAG 3221 >seq788035 Length=1366 Score = 105 bits (116), Expect = 7e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 84172 AAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAA 84231 ||||||||||||| ||||| | ||||||| ||||| || |||||| |||||||| | Sbjct 1084 AAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTA 1025 Query 84232 GACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACT 84291 | || | || || | |||||| ||||| ||||||||||| || |||||||| || | Sbjct 1024 ATTGGCCAATATAACCATTAGCAGCCACAATGTTATAAGTTTCTTCCTCTTGACCAAATT 965 Query 84292 TGTAACCA 84299 |||||||| Sbjct 964 TGTAACCA 957 >seq36335 Length=20465 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 84399 ACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATG 84458 || || |||||||| || ||||||||||||||||| || || |||||||| |||| ||| Sbjct 3397 ACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATA 3456 Query 84459 TAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAA 84518 ||||||| || || ||||| || | |||| |||||||| || ||||| || | | Sbjct 3457 AAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAATA 3516 Query 84519 GGATA 84523 || || Sbjct 3517 GGGTA 3521 >seq856698 Length=257 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| || | Sbjct 130 GGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCACGGTTGATG 71 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||| ||||| || | | || ||||| || Sbjct 70 ATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTTGAAATTG 11 Query 84105 AATCCATT 84112 || ||||| Sbjct 10 AAACCATT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558288408253600