Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq37709 82.4 8e-11 >seq37709 Length=12305 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 6811 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 6752 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| | | |||| || ||||| | ||| ||||| || | ||| || | ||||| Sbjct 6751 GTATGTTTTGACAGCAGACTCAATATCATCCTTG-TGTATTCCAACAGAAACCCTCATTA 6693 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||||| ||| |||||||| |||| || | ||||| ||||| || | || | Sbjct 6692 ACATATGTTGCGGTCTTTCCACAACCTTCCCGCCAACTTTCAGTAGATAAGACCTCTCAA 6633 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || || |||||||| | | ||| |||||| |||||| ||| || Sbjct 6632 GCGTCTTGAAACCAAAGAAATCGTAGTCAAAGTCTCTATCATAAATTAT 6584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549331926448800