Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq9086 102 6e-16 seq2155 102 6e-16 seq1750881 93.3 3e-13 seq765366 87.8 1e-11 seq136440 86.0 5e-11 seq4069 86.0 5e-11 >seq9086 Length=3140 Score = 102 bits (112), Expect = 6e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || || |||||||| || | || || || || |||| Sbjct 1913 ATGCTGTTGTTACTGTCCCTGCCTACTTCAATGACTCTCAGAGGCAGGCCACCAAGGATG 1972 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || |||||| | ||||| |||||||| || ||||||||||| Sbjct 1973 CTGGAGTGATTGCAGGCCTAAATGTTATGCGTATCATCAATGAGCCAACTGCTGCTGCTA 2032 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 2033 TTGCTTATGGCCTTGACAA 2051 >seq2155 Length=11791 Score = 102 bits (112), Expect = 6e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | ||||| || ||||| || |||||| Sbjct 5204 GCTGTTATTACTGTCCCAGCTTATTTCAATGATGCTCAACGCCAGGCTACCAAGGATGCT 5145 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||||||||| | ||| | | ||||||||||| || ||||||||||| | Sbjct 5144 GGTAGGATTGCTGGACTGGAGGTTATGAGGATTATCAATGAGCCCACTGCTGCTGCTTTG 5085 Query 550520 GCATATGGA 550528 |||||||| Sbjct 5084 TCATATGGA 5076 >seq1750881 Length=2368 Score = 93.3 bits (102), Expect = 3e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| || || ||||| | || | || || || || |||||| Sbjct 648 GCTGTCATTACTGTTCCAGCTTACTTCAATGATGCTCAGAGGCAGGCCACCAAGGATGCT 589 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || ||||||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 588 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 530 >seq765366 Length=14197 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| | ||| || || |||||||| ||| | ||| |||||||||||||| || Sbjct 779 CCTGAGCCTGAGCACCAGGTGAAGGGTTGACTCCTTCTGG--ATATTGTAATCAGCAAGG 836 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | | ||| |||||||| || || ||||| || |||| ||||| || || || || Sbjct 837 GTCCGTCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGCGGGATG 896 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 || || ||||| || || ||| || || || || || |||| | || | | || Sbjct 897 CCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCAGAG-GACTCGACCTC 955 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || || || ||||| || ||||| Sbjct 956 AAGTGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 1000 >seq136440 Length=13151 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 || || | || || || || || ||||| || || ||||| | || || || || || | Sbjct 6059 TTTCGAAGGCTGTGATCACAGTTCCAGCTTACTTCAATGATGCCCAGCGGCAGGCAACCA 6118 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | || ||||| || |||||||||||| |||| | | || ||||| ||||| ||||||| Sbjct 6119 AGGACGCTGGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACTGCTG 6178 Query 550512 CTGCACTTGCATATGGA 550528 |||| || | |||||| Sbjct 6179 CTGCTCTGTCTTATGGA 6195 >seq4069 Length=14202 Score = 86.0 bits (94), Expect = 5e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 390820 TCACCATATACACATTGAATTAATTTGTCATTGGCATTTCTTACGGTACCATCATACTCT 390879 || ||||| | | ||||||| | | || || ||||| |||||||||||||| | Sbjct 1428 TCTCCATACAAAAATTGAATGACATCACCAAGGGAGTTTCTCACGGTACCATCATATTTC 1487 Query 390880 ACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATATAACCAGTGTCTGCAGTT 390939 || | ||||| || | || || | | || || || || ||||| || | |||| Sbjct 1488 ACCATGATGTCCTCCATAGCCTTCACGAGCCTCCTCTGTATGTATCCAGTCTCAGAAGTT 1547 Query 390940 TTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAGAAAAATTCC 390996 || | ||||||| ||| | ||||||||| || ||||| | ||||||||||||||| Sbjct 1548 TTCACAGCAGTATCAATCAAACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCC 1604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3933129749325800