Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq57095 260 4e-65 seq213450 138 3e-28 seq856698 98.7 3e-16 >seq57095 Length=8353 Score = 260 bits (288), Expect = 4e-65 Identities = 355/493 (72%), Gaps = 2/493 (0%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || ||||| || ||||| || | ||||||||||| || | ||||| || Sbjct 496 TGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 437 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | ||||||||||| || || || ||||| Sbjct 436 ACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 378 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| || || ||| | || ||||||||||| || || Sbjct 377 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 318 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || |||||| | || |||||||| || |||||||| Sbjct 317 TGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 258 Query 26050 TGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTT 26109 || | | || |||||| |||||||||| || || ||| | || ||| | | ||||| Sbjct 257 TGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTT 198 Query 26110 CTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAAT 26169 |||| | || ||||| ||| || | |||||||||| || | | || || || Sbjct 197 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 138 Query 26170 GAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTT 26229 | | || ||||| |||||||||| |||| || | | || ||| || || ||||| Sbjct 137 GCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 78 Query 26230 AGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTAC 26289 |||| ||| | || ||||| || ||| |||||| |||||| | || ||||||||||| Sbjct 77 GATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTAC 18 Query 26290 TTTTAACTTTATG 26302 ||| ||||||||| Sbjct 17 TTTCAACTTTATG 5 >seq213450 Length=3525 Score = 138 bits (152), Expect = 3e-28 Identities = 217/310 (70%), Gaps = 7/310 (2%) Strand=Plus/Plus Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || ||||| |||| || | || ||||| | ||| |||||| |||||| | || Sbjct 3223 GCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGA 3282 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| ||||||||| | ||||| || |||| || || || | ||||| Sbjct 3283 ATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCAT 3342 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 | ||| || ||| ||||| ||||| || |||| || | || ||| ||||||||| Sbjct 3343 CTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCAT 3402 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||| || || | || ||||| || || | | || ||| | Sbjct 3403 GGTTCCATGG-TAGTT------TGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAG 3455 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518 || || || ||||| ||||| |||||||| ||||||||||| ||||| || || || ||| Sbjct 3456 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 3515 Query 26519 GGGAGATTAA 26528 || |||||| Sbjct 3516 GGCCGATTAA 3525 >seq856698 Length=257 Score = 98.7 bits (108), Expect = 3e-16 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 26643 TAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACA 26701 |||||||||| || || ||||| || ||||| ||| || || | | || || ||| Sbjct 1 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAA-TACT 59 Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761 ||||||||| | | ||||| |||||||| || | ||||| ||||| || ||||||||| Sbjct 60 TGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCT 119 Query 26762 CATAACTTTCCACTTGACTTAGC 26784 || ||||| || || |||||||| Sbjct 120 CACAACTTCCCTCTAGACTTAGC 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143558028634080