Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq57095 289 8e-74 seq213450 170 6e-38 seq36335 129 2e-25 seq761979 102 2e-17 seq788035 96.9 1e-15 seq856698 91.5 4e-14 >seq57095 Length=8353 Score = 289 bits (320), Expect = 8e-74 Identities = 363/498 (73%), Gaps = 0/498 (0%) Strand=Plus/Plus Query 36451 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 36510 ||| |||||| |||||||| || || || || | ||||||||||||||| || || |||| Sbjct 1 CAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTT 60 Query 36511 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 36570 | |||| |||||| | ||||| |||||| || ||||||||||| |||||||| || | Sbjct 61 GACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAA 120 Query 36571 CACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAG 36630 || ||||| || | |||||| || | ||||||||||||| | || |||| ||| Sbjct 121 CAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAAC 180 Query 36631 CTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACC 36690 | | ||||| | ||||| | ||||| || | ||| || || || || ||||||| Sbjct 181 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACC 240 Query 36691 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATG 36750 |||| || | | |||||||||||| |||||||| ||||| | ||||| || || | Sbjct 241 ACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAG 300 Query 36751 ATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCT 36810 || | || || |||||||| || ||||||||||| ||||| | || || ||||||| Sbjct 301 TAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCT 360 Query 36811 CACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCA 36870 ||||||||||||| ||||| || ||||| ||||| | || || || | |||| | | Sbjct 361 CACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAG 420 Query 36871 CTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGT 36930 ||| || || | | ||||||||| | || || ||||| || | || || || || | Sbjct 421 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTT 480 Query 36931 TTGTACTTGTAACCCAGT 36948 || || || | ||||| Sbjct 481 CAGTGCTAGTTATCCAGT 498 >seq213450 Length=3525 Score = 170 bits (188), Expect = 6e-38 Identities = 220/303 (73%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 36237 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 36296 ||||| || |||||||| || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 3517 CCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAA 3458 Query 36297 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTT 36356 || | || |||||| |||| ||||| | || | || || || | Sbjct 3457 CCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCA------AACTACCATGGAA- 3405 Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| ||||| | || ||||||| || || ||||| | ||| || || Sbjct 3404 CCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACATGTGAAAT 3345 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 ||||||||| ||| ||||| |||| |||||| |||| |||||| |||||||| || || Sbjct 3344 AGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGTACCAGAG 3285 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || | ||||||||||||||| || | ||||| |||| || || | ||||| ||| Sbjct 3284 ATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCAAGAAAACA 3225 Query 36537 GCA 36539 ||| Sbjct 3224 GCA 3222 >seq36335 Length=20465 Score = 129 bits (142), Expect = 2e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 36399 ACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATA 36458 ||||| | ||| ||||| |||||||||||||| ||||| |||||||| || |||| |||| Sbjct 3397 ACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATA 3456 Query 36459 AAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAA 36518 || |||||||| || || || || | | ||||||||||||| || || ||||| |||| | Sbjct 3457 AAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAATA 3516 Query 36519 GGGTAGACTAAGAA 36532 ||||| | ||||| Sbjct 3517 GGGTAAATCAAGAA 3530 >seq761979 Length=10221 Score = 102 bits (112), Expect = 2e-17 Identities = 188/276 (68%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 36553 CAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCC 36612 ||||| || |||| || ||| || || || |||||| || | ||||||||||| Sbjct 202 CAGGGCCTCAATATGCAACAACAATTCAAGGATGCATACCCAGACGGAAACTAAGTTCCT 261 Query 36613 ATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATG 36672 | | | |||| ||| | | ||||| | ||||| || | ||| || | ||| | Sbjct 262 ACTCACAACCCATATAACAAGCTACACCAAGTAAGAAGTGTAAAAAAATTAGCTCATAAG 321 Query 36673 GTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAA 36732 | || || || ||||||||||| || | | |||| ||| || |||||||| ||||| | Sbjct 322 GACCACCATTGTATAACCACTCATCAACCGATGCAACTTTTCAAATTGGGTAAAAGTGCA 381 Query 36733 GACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTA 36792 ||| | |||| | || | || || |||||||| || |||||| |||| |||| Sbjct 382 ATTTGATCACCGTCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTTCATAAAGTA 441 Query 36793 ATGCTCCTGAGACAGGCTCACGAATACCATCTATAT 36828 | | | || ||| | ||| ||||| |||| |||| Sbjct 442 AAGAACTAGAAACATGTTCATGAATATCATCAATAT 477 >seq788035 Length=1366 Score = 96.9 bits (106), Expect = 1e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 36172 AAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGA 36231 ||||||||| |||||| |||||| || || ||||| |||||||| |||||||| | Sbjct 1084 AAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTA 1025 Query 36232 GTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATT 36291 | |||| || |||| ||| || ||||||||||| || ||||| ||||| || |||| Sbjct 1024 ATTGGCCAATATAACCATTAGCAGCCACAATGTTATAAGTTTCTTCCTCTTGACCAAATT 965 Query 36292 TATATCCA 36299 | || ||| Sbjct 964 TGTAACCA 957 >seq856698 Length=257 Score = 91.5 bits (100), Expect = 4e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||| ||| || ||||||||||| || ||||| |||||||| |||||||| Sbjct 151 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATA 92 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || | || |||||||| | || ||||||||||| Sbjct 91 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGT 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147205527180680