Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq57095 253 6e-63 seq213450 152 2e-32 seq36335 131 5e-26 seq856698 113 1e-20 seq788035 109 2e-19 >seq57095 Length=8353 Score = 253 bits (280), Expect = 6e-63 Identities = 359/502 (72%), Gaps = 2/502 (0%) Strand=Plus/Plus Query 5677 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCC 5736 ||||||||| |||||||||||||| || | ||||||||||||| || ||||| || || Sbjct 5 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACC 64 Query 5737 GAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGC 5795 | |||||| | || || || | |||| || || ||||| || ||||||||||| || Sbjct 65 AATAGGGTAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCAACAG 123 Query 5796 AAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTG 5855 |||||| || ||||| || | | | ||||||||||||| | || |||| ||| | Sbjct 124 CAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAG 183 Query 5856 CGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATT 5915 | | ||||| | |||||| | || | || | || || || |||||||| | ||| | Sbjct 184 CTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACT 243 Query 5916 CATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGG 5975 |||| | | || |||||||| || || || ||||| || || || || || | | Sbjct 244 CATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAG 303 Query 5976 GTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCAC 6035 | | || || || || || || ||||||||||| |||| ||| || | || || |||| Sbjct 304 GAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCAC 363 Query 6036 GTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTG 6095 | || || || || || ||||| || ||||| | ||| || | |||||| ||| ||||| Sbjct 364 GAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTG 423 Query 6096 CGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGG 6155 |||| || | | || ||||| || ||||| ||||| || | || || || || | | Sbjct 424 CGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAG 483 Query 6156 TGCTAGTAACCCAGTCACAGAA 6177 ||||||| | ||||| ||||| Sbjct 484 TGCTAGTTATCCAGTTGCAGAA 505 >seq213450 Length=3525 Score = 152 bits (168), Expect = 2e-32 Identities = 191/261 (73%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 5459 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATAT 5518 ||||| || |||||||| || ||||| ||||| || ||||||||||| || ||||| || Sbjct 3517 CCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAA 3458 Query 5519 CCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTT 5578 || | || || | |||| ||||| | || | || || || | Sbjct 3457 CCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCA------AACTACCATGGAA- 3405 Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| ||| | | || ||||||| ||||| ||||| | |||||| || Sbjct 3404 CCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACATGTGAAAT 3345 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 ||||||||| ||| ||||| |||| ||| ||||| | ||||||||| |||||||||||| Sbjct 3344 AGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGTACCAGAG 3285 Query 5699 ATACCAAGAGGCATACCATCA 5719 || || | ||||||||||||| Sbjct 3284 ATTCCTAAAGGCATACCATCA 3264 >seq36335 Length=20465 Score = 131 bits (144), Expect = 5e-26 Identities = 104/125 (83%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 5621 ACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATA 5680 ||||| | ||||||||| |||||||||||||| ||||| |||||||||||||| | |||| Sbjct 3397 ACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATA 3456 Query 5681 AAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAA 5740 ||||| |||||||| ||||| || | | ||||||||||| || ||||| || || | | Sbjct 3457 AAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAATA 3516 Query 5741 GGGTA 5745 ||||| Sbjct 3517 GGGTA 3521 >seq856698 Length=257 Score = 113 bits (124), Expect = 1e-20 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||| || || ||||||||||||||||| ||||| ||||||||||||||| Sbjct 151 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATA 92 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 |||||||| |||||||| | || ||| |||||||| Sbjct 91 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGT 57 >seq788035 Length=1366 Score = 109 bits (120), Expect = 2e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 5394 AAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGA 5453 ||| ||||| |||||| |||||| ||| |||||||| |||||||| |||||||| | Sbjct 1084 AAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTA 1025 Query 5454 GTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATT 5513 | |||| || |||| ||| || ||||||||||| |||||||||||||| || |||| Sbjct 1024 ATTGGCCAATATAACCATTAGCAGCCACAATGTTATAAGTTTCTTCCTCTTGACCAAATT 965 Query 5514 TATATCCA 5521 | || ||| Sbjct 964 TGTAACCA 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149353324608120