Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq57095 277 5e-70 seq213450 170 6e-38 seq36335 129 2e-25 seq788035 100 8e-17 seq856698 95.1 4e-15 >seq57095 Length=8353 Score = 277 bits (306), Expect = 5e-70 Identities = 360/498 (72%), Gaps = 0/498 (0%) Strand=Plus/Plus Query 25931 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 25990 ||| |||||| |||||||| || || || || | ||||||||||||||| || || |||| Sbjct 1 CAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTT 60 Query 25991 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 26050 | |||| |||||| | ||||| |||||| || ||||||||||| |||||||| || | Sbjct 61 GACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAA 120 Query 26051 CACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAG 26110 || ||||| || | ||| || || | ||||||||||||| | || |||| ||| Sbjct 121 CAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAAC 180 Query 26111 CTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACC 26170 | | || | | ||||| | ||||| || | ||| || ||||| || || |||| Sbjct 181 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACC 240 Query 26171 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATG 26230 |||| || | | |||||||||||| |||||||| ||||| | ||||| || ||| | Sbjct 241 ACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAG 300 Query 26231 ACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCT 26290 || | || || || ||||| || ||||||||||| ||||| | || || ||||||| Sbjct 301 TAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCT 360 Query 26291 CACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCA 26350 ||||||||||||| ||||| || ||||| ||||| | || || || | |||| | | Sbjct 361 CACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAG 420 Query 26351 CTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGT 26410 ||| || || | | ||||||||| | || || ||||| || | || || || || | Sbjct 421 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTT 480 Query 26411 TTGTACTTGTAACCCAGT 26428 || || || | ||||| Sbjct 481 CAGTGCTAGTTATCCAGT 498 >seq213450 Length=3525 Score = 170 bits (188), Expect = 6e-38 Identities = 220/303 (73%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 25717 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 25776 ||||| || |||||||| || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 3517 CCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAA 3458 Query 25777 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTT 25836 || | || |||||| |||| ||||| | || | || || || | Sbjct 3457 CCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCA------AACTACCATGGAA- 3405 Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| ||||| | || ||||||| || || ||||| | ||| || || Sbjct 3404 CCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACATGTGAAAT 3345 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 ||||||||| ||| ||||| |||| |||||| |||| |||||| |||||||| || || Sbjct 3344 AGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGTACCAGAG 3285 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || | ||||||||||||||| || | ||||| |||| || || | ||||| ||| Sbjct 3284 ATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCAAGAAAACA 3225 Query 26017 GCA 26019 ||| Sbjct 3224 GCA 3222 >seq36335 Length=20465 Score = 129 bits (142), Expect = 2e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25879 ACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATA 25938 ||||| | ||| ||||| |||||||||||||| ||||| |||||||| || |||| |||| Sbjct 3397 ACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATA 3456 Query 25939 AAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAA 25998 || |||||||| || || || || | | ||||||||||||| || || ||||| |||| | Sbjct 3457 AAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAATA 3516 Query 25999 GGGTAGACTAAGAA 26012 ||||| | ||||| Sbjct 3517 GGGTAAATCAAGAA 3530 >seq788035 Length=1366 Score = 100 bits (110), Expect = 8e-17 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25652 AAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGA 25711 ||||||||| |||||| |||||| ||| || ||||| |||||||| |||||||| | Sbjct 1084 AAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTA 1025 Query 25712 GTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATT 25771 | |||| || |||| ||| || ||||||||||| || ||||| ||||| || |||| Sbjct 1024 ATTGGCCAATATAACCATTAGCAGCCACAATGTTATAAGTTTCTTCCTCTTGACCAAATT 965 Query 25772 TATATCCA 25779 | || ||| Sbjct 964 TGTAACCA 957 >seq856698 Length=257 Score = 95.1 bits (104), Expect = 4e-15 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||||||| |||||||||||||| || ||||| |||||||| |||||||| Sbjct 151 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATA 92 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 25538 || | || |||||||| | || ||||||||||| Sbjct 91 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGT 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148711490099920