Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq57095 251 8e-62 seq213450 183 3e-41 seq856698 116 4e-21 seq36335 98.7 1e-15 seq703676 87.8 2e-12 >seq57095 Length=8353 Score = 251 bits (278), Expect = 8e-62 Identities = 342/476 (72%), Gaps = 6/476 (1%) Strand=Plus/Minus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| ||||| | || |||| ||||||||||| |||||||||||| ||| | | || Sbjct 482 TGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGC 423 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | | || || || || || ||||| || || |||||||| ||||| |||||||| | Sbjct 422 AACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCG 363 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 || |||||| | ||||| | || ||||| ||||| || |||||||||||| | |||| Sbjct 362 TGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCC 303 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 || ||| || || || | ||||| || || || |||||||| ||| || ||||||| Sbjct 302 TACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGA 243 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 |||||| || |||||||| |||| | || | || | |||||| | | || | Sbjct 242 GTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT--- 186 Query 162822 AGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGAT 162878 ||| | | | |||||| ||||||||||| || ||| | |||||||| |||||||| Sbjct 185 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT 126 Query 162879 CTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTT 162938 ||||||||| || || || || | || || ||||| |||||| | || ||| | Sbjct 125 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTAT 66 Query 162939 CGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACT 162994 |||||||| || ||||| | |||||| | || || ||||||||||| |||| Sbjct 65 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACT 10 >seq213450 Length=3525 Score = 183 bits (202), Expect = 3e-41 Identities = 226/308 (73%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| | || || | |||||||| || ||||| | |||||| | || Sbjct 3223 GCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGA 3282 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| ||| | || || || |||||||||||||| | ||||| Sbjct 3283 ATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCAT 3342 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 | || || ||| | || || || |||||||||| ||||| || || | ||||||||| Sbjct 3343 CTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCAT 3402 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 ||||| | || || || | ||||| ||||||||||| | || || || | Sbjct 3403 GGTTC-CATGGTAGTT------TGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAG 3455 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| || || || ||||| ||||||||||| || ||||| ||||||||||| || ||| Sbjct 3456 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 3515 Query 163216 GGTCGCTT 163223 || || || Sbjct 3516 GGCCGATT 3523 >seq856698 Length=257 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGG 163401 || |||||||| ||||||||||| || ||||| ||| || ||| ||||||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 163402 GCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 163461 || |||||| | ||| | || |||||||||||||| ||||| || |||||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 163462 AACTTCCCACTTGACCTTGCTGCTGCTGA 163490 |||||||| || ||| | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq36335 Length=20465 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 162917 CTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTA 162976 || |||||||| | || ||| | |||||||| || ||||| | |||| | | || | Sbjct 3535 CTTTGTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAA 3476 Query 162977 TTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACC 163036 | || |||||||| |||| ||| | || ||||| ||||||||||||||||| ||||| | Sbjct 3475 TCTCCGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 3416 Query 163037 CCTTCCATATGATTGGAGT 163055 | ||||| ||| | || || Sbjct 3415 CATTCCACATGTTAGGTGT 3397 >seq703676 Length=206 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 163059 AGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCT 163118 |||||||||||| | ||| || || ||||||||||| ||||| | || || ||| | | Sbjct 128 AGGTGTATTCGGCGATTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTT 69 Query 163119 TATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGA 163178 ||||| ||||||||||| | || || || | ||||| || || || ||||| || Sbjct 68 GATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAAGAGGA 9 Query 163179 AGAGACTT 163186 |||||||| Sbjct 8 AGAGACTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540513044224800