Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq78186 284 2e-71 >seq78186 Length=6745 Score = 284 bits (314), Expect = 2e-71 Identities = 583/860 (68%), Gaps = 19/860 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 1182 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 1123 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCC-GTGTCAGGCCCATCTGTTCCAGCA 47957 ||| || ||| ||||||| | ||| |||| | || ||| |||| | |||| Sbjct 1122 CATCCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTGCAG-CCCAGCGCCATGAGCA 1064 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||||||||| | ||||||| | ||||||||| | ||| | Sbjct 1063 GGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCCACGAGCG 1004 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | || | || |||||| |||| || | |||||| ||| || |||| Sbjct 1003 CGCAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCCGAGACGATCT 944 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 ||||||||||| | ||| ||||||| || | ||||| | |||||| | Sbjct 943 CGAAGACGCGGGACTCGTCCAGCTTGCCGCGCAGGA---TGTCGTAGAGGAGGCAGGCGA 887 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || |||| Sbjct 886 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 827 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| |||| || ||||||||||| || || ||| ||||| |||||||||||||||| Sbjct 826 TGAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 767 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCAG 48316 | || ||||| ||| || | ||| | |||||| | | | | ||||||| Sbjct 766 CGACGCAGGCGAAGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAG 711 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA-- 48374 ||||||||||| ||||| || | || || || || ||||| ||||||| Sbjct 710 CGCAGCGCCCAGTCGGCCTTGCGGCGGACGGCCGGGATGGTGTCGATGGCGCGGAAGAGG 651 Query 48375 -GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | ||| ||| | |||| | ||||| || ||| | ||||||||| Sbjct 650 CGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTACATCTCG 594 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || ||||||||||| |||||||||||||||||||| |||||| Sbjct 593 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCGACCTGC 534 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| || || ||||| || || || || || || || ||| Sbjct 533 ACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAG 474 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCCC 48610 ||||| || || || | ||| |||||||||| || || ||| | | |||| Sbjct 473 AAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGGGTGGTGTCCCAGTGG 414 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 | |||| | |||||||| || || | ||||||||||| || | || || ||| Sbjct 413 CGCGCGTCGGAGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCACCGCCTTCTTG 354 Query 48671 TACATGCCCCATATGTCCGG 48690 || | |||| || | ||| Sbjct 353 TAGAACTCCCAGATCTGCGG 334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910358826572800