Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq78186 235 1e-56 >seq78186 Length=6745 Score = 235 bits (260), Expect = 1e-56 Identities = 569/855 (67%), Gaps = 23/855 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| ||| |||||||||||| ||| | || || Sbjct 340 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTC 399 Query 25537 GCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| || | || ||||| ||||||| || || || Sbjct 400 TCCTCCGACGCGCGCCACTGGGACACCACCCTCTCCAACGACGAGCGCCACTTCATCTCC 459 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 460 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 519 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||||| | |||||||| |||||||| |||||| Sbjct 520 TTCATGTCCGACGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATC 579 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| || ||| | ||| ||||| |||| || | Sbjct 580 GAGAACATCCACTCCGAGATGTACTCCCTGCTCATCGAGACCTACATCCGCGACGACGTC 639 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || || || || | |||||||| ||| || | || | ||||| Sbjct 640 GAGAAGGACCGCCTCTTCCGCGCCATCGACACCATCCCGGCCGTCCGCCGCAAGGCCGAC 699 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| || |||||| || || | |||||| || |||||| | || ||||| Sbjct 700 TGGGCGCTGCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCATCGTCGCCTT 755 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||||||||| ||| || || || ||| |||||||||||||||||| Sbjct 756 CGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGC-GCCATCTTCTGGCTCAAG 813 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 814 AAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 873 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 || ||| | || || |||||||| |||||| | | | ||| | | || || | | Sbjct 874 CTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACATCCTGCGCGGC-AAGCTGGACGA 929 Query 26071 GAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 | | ||||| | ||| || ||||| ||||| ||||||| |||||| Sbjct 930 GTCCCGCGTCTTCGAGATCGTCTCGGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGA 989 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 ||||||||||| | ||||||||||| ||||| |||| Sbjct 990 CGCGCTCCCCTGCGCGCTCGTGGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTT 1049 Query 26190 TGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAA 26246 || ||||||| ||||| || | |||||| | || || |||| |||| | || Sbjct 1050 CGTCGCCGACCGCCTGCTCATGGC-GCTGGGCTGCAACAAGCTGTACA--ACGCCACCAA 1106 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 ||||||||||| ||||| ||| ||| || | || |||||||||||||| || ||| | Sbjct 1107 CCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCG 1166 Query 26307 GGTCGGCGACTATCA 26321 |||||||| || || Sbjct 1167 CGTCGGCGAGTACCA 1181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 907731925484800