Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq45179 486 2e-132 seq57095 320 2e-82 seq155648 203 3e-47 seq213450 174 2e-38 seq36335 131 2e-25 seq79754 122 9e-23 seq159272 120 3e-22 seq761979 118 1e-21 seq352821 107 2e-18 seq769592 100 3e-16 seq788035 96.9 3e-15 seq1813671 95.1 1e-14 >seq45179 Length=9647 Score = 486 bits (538), Expect = 2e-132 Identities = 539/719 (75%), Gaps = 0/719 (0%) Strand=Plus/Minus Query 10094 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTA 10153 || || || ||| ||||||| || |||||||| || || || |||| || || |||||| Sbjct 9622 GGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTA 9563 Query 10154 CGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCT 10213 ||||| ||||| || || | | || | | || ||||| ||||| ||| | || ||| Sbjct 9562 CGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCATTCTCT 9503 Query 10214 GGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGG 10273 || || |||||||||||||| ||| ||||| || |||||||| || || ||| ||||| Sbjct 9502 GGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGG 9443 Query 10274 TTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGC 10333 ||||||||||||||||| ||||| || ||||| || || ||| | || ||| |||| || Sbjct 9442 TTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTTCCAAGGA 9383 Query 10334 TTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGG 10393 ||||||||||||||| | || || || ||||||||||||||||| || || | || | | Sbjct 9382 TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCG 9323 Query 10394 GCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAA 10453 || || |||| || || || |||| || ||||||||||| || | | | || || || Sbjct 9322 GCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGTGAT 9263 Query 10454 CAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTT 10513 ||||| || ||| |||||| | ||||||| ||||| || ||||| ||||| Sbjct 9262 GGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 9203 Query 10514 ACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTT 10573 ||||||||||| || |||||||| || ||||| |||||||| ||||||||| ||| | Sbjct 9202 ACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTA 9143 Query 10574 CATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATT 10633 |||||||||||||| |||||||| || | ||| | |||| | ||||||| | || Sbjct 9142 CATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTT 9083 Query 10634 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAA 10693 || | ||||| || | ||||| || || ||||| || || || ||| | || | ||| Sbjct 9082 GGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAA 9023 Query 10694 GATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCA 10753 ||||||||||||||||| ||||| || || ||||| ||| | ||||| ||| ||||||| Sbjct 9022 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCG 8963 Query 10754 TGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 ||||||||| | || || || || |||| || | ||||| || || ||||| || Sbjct 8962 TGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 8904 >seq57095 Length=8353 Score = 320 bits (354), Expect = 2e-82 Identities = 360/479 (75%), Gaps = 2/479 (0%) Strand=Plus/Minus Query 8275 AATCGCTTGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTAC 8333 ||||| | || |||| ||||| || ||| | |||||||| ||| || ||| |||| || Sbjct 478 AATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACC-TTATTGACCGCAAC 420 Query 8334 AATTTGCTTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGA 8393 | || |||| ||| ||| | ||||| ||||| || || || || || || || || Sbjct 419 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 360 Query 8394 ACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAG 8453 || ||| |||| ||| | | || || ||||| || ||||||||||| || |||| | Sbjct 359 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTAC 300 Query 8454 CTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTG 8513 ||| || || || | ||||| ||||| || |||||||| || ||| |||||||||| Sbjct 299 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 240 Query 8514 GCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGC 8573 | | ||||| ||||||||||| |||| | ||| | |||||| | ||||| || | Sbjct 239 GTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 180 Query 8574 TTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGT 8633 ||||||||||||||| ||||||||| || ||| || || ||||| |||||||| ||| Sbjct 179 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 120 Query 8634 TGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCA 8693 |||||| || ||||||||||| |||||| ||||||| ||| | | || ||| ||||||| Sbjct 119 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCA 60 Query 8694 AGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTG 8752 ||| || ||||||||||||||| | || ||||| ||||| ||||||| |||| ||| Sbjct 59 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTG 1 >seq155648 Length=2022 Score = 203 bits (224), Expect = 3e-47 Identities = 231/310 (75%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 10211 TCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGT 10270 ||||| || |||||| ||||||| || ||||| || ||||||| || || ||| || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 10271 TGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAG 10330 |||||||||||||||||||| ||||| || |||| || || ||| | || ||| |||| Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 10331 GGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGA 10390 || ||||||||||||||| | || || || ||||||||||||||||| || || | || Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 10391 GGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGC 10450 | | | || | || || || || |||| || ||||||||||| || | | | || || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 10451 GAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATG 10510 || ||||| || ||| |||||| | ||||||| ||||| || ||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 10511 GTTACTGCTA 10520 || ||||||| Sbjct 1722 GTCACTGCTA 1713 >seq213450 Length=3525 Score = 174 bits (192), Expect = 2e-38 Identities = 227/313 (73%), Gaps = 7/313 (2%) Strand=Plus/Plus Query 8660 CTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTC 8719 || ||||||| ||| | | || || |||||||||| || ||||||||||||||| Sbjct 3218 CTACTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTT 3277 Query 8720 TTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGA 8779 | || ||||| ||||| ||||||| |||| |||| || ||| | |||||||||||| | | Sbjct 3278 TAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTA 3337 Query 8780 TGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAA 8839 |||| | || |||||| | ||||| |||||||| |||| ||| || || || || | Sbjct 3338 TGCATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTA 3397 Query 8840 TGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAA 8899 |||||||||| | | || || || | | || || || |||| || || | Sbjct 3398 TGCATGGTTC-CATGGTAGTT------TGATCAGGGAAACTACTGAAAATGAATCCGCTA 3450 Query 8900 ACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCT 8959 | | || ||||| || |||||||| || || ||||| || ||||| || |||||||| | Sbjct 3451 ATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTT 3510 Query 8960 ACTTTGGTCGCTT 8972 | ||||| || || Sbjct 3511 ATTTTGGCCGATT 3523 >seq36335 Length=20465 Score = 131 bits (144), Expect = 2e-25 Identities = 104/125 (83%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 8680 TATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTC 8739 || ||| |||||||||| || ||||||||||||| | | || ||||||||||| ||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 8740 AACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTT 8799 |||| |||| |||| |||||||| |||||||||||||| ||||| || ||||||||| | Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 8800 GGTGT 8804 ||||| Sbjct 3401 GGTGT 3397 >seq79754 Length=5746 Score = 122 bits (134), Expect = 9e-23 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 10457 GCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACT 10516 ||||| || ||| |||||| | ||||||| ||||| || ||||| ||||| ||| Sbjct 4793 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 4852 Query 10517 GCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCAT 10576 ||||||||||| |||||||| || |||| |||||||| ||||||| | ||| | ||| Sbjct 4853 GCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACAT 4912 Query 10577 TTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGA 10613 ||||||||||| ||||||| || | ||| | |||| Sbjct 4913 TTCTTTATGCTATTTGTACTCGTCACTGGTTTATGGA 4949 >seq159272 Length=944 Score = 120 bits (132), Expect = 3e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 10211 TCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGT 10270 ||||| || |||| | |||||| ||| ||||| || || ||||| || || ||| || Sbjct 303 TCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTGGT 244 Query 10271 TGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAG 10330 |||||| |||| | ||||| ||| | || ||||| || || ||| | || ||| |||| Sbjct 243 TGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCTTTTCTTCCAA 184 Query 10331 GGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTG 10376 || |||||||||||||| | || || || |||||||||||| ||| Sbjct 183 GGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGATTTG 138 >seq761979 Length=10221 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 8422 AACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTAC 8481 ||||| || ||||||||||| || |||| | || | | || | ||||| ||| Sbjct 430 AACAATATTATCTCTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCACTTTTAC 371 Query 8482 CCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTT 8541 || || || ||| || || ||||||||||| | ||||| ||||||||||| |||| Sbjct 370 CCAATTTGAAAAGTTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTA 311 Query 8542 GTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCT 8601 | |||| |||||| | ||||| || | |||||||||| |||| | ||||||| | Sbjct 310 ATTTTTTTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAACTTAGT 251 Query 8602 TACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 8639 | ||| || || |||| |||||| || ||||||||| Sbjct 250 TTCCGTCTGGGTATGCATCCTTGAATTGTTGTTGCATA 213 >seq352821 Length=202 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 10620 CTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGA 10679 ||||||| | |||| | ||||| || | ||||| || || ||||| || || || | Sbjct 16 CTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAA 75 Query 10680 TCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACG 10739 || | || | ||||||||||||||||| || ||||| || || ||||| ||| | |||| Sbjct 76 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACG 135 Query 10740 AAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAG 10799 | ||| ||||||| ||||||||| | || || || || |||| || | ||||| | Sbjct 136 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 195 Query 10800 AAGAAGT 10806 | || || Sbjct 196 AGGAGGT 202 >seq769592 Length=4310 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 10214 GGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGG 10273 || || |||||||||||||| | | ||| | || |||||||| || || ||||||||| Sbjct 1362 GGCCCAATTGCTGTTTTTGTTTCTATATTCTTTATTTATCCACTGGGGCAATCTAGTTGG 1421 Query 10274 TTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTT 10308 ||||||||||||||||| ||||| |||||||| || Sbjct 1422 TTCTTTGCGCCGAGTTTTGGCGTAGCGGCGATATT 1456 >seq788035 Length=1366 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 8904 TGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTT 8963 ||| ||||| || |||||||| || |||||||| |||||||| || ||| |||| || | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 8964 TGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCT 9023 ||| | || |||||||||||||| ||||||||| ||| | || || |||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 9024 CGCTGC 9029 ||||| Sbjct 1077 GGCTGC 1082 >seq1813671 Length=280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 8574 TTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGT 8633 ||||||||||||||| ||||| || || ||| || || ||||| |||||||| ||| Sbjct 55 TTATATGGGTCGTGAGCGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGT 114 Query 8634 TGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTC 8673 |||||| || |||| |||||| |||||| ||||||| ||| Sbjct 115 TGCATATTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTC 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504740280480000