Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq747945 334 2e-87 >seq747945 Length=243 Score = 334 bits (370), Expect = 2e-87 Identities = 220/243 (91%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 40686 AATGAGCTCGAAAAGGTTTCGTTCGACCCTGCGCGTGATTTGCTGATCTCGGTTGGTGAC 40745 ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct 1 AATGAACTCGAAAAGGTTTCGTTCGACCCTGCGTGTGATTTGCTGATTTCGGTTGGAGAC 60 Query 40746 CTTGTTGACCGCGGCGCGGAAAACGTCGAGTGCCTGGATCTGATTACTATGCCGTGGTTC 40805 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 61 CTTGTTGACCGCGGCGCGGAAAACGTCGAGTGCCTGGAGCTGATTACTATGCCTTGGTTC 120 Query 40806 AGGGCAGTGCGCGGTAACCATGAGCAGATGATGGTTGATGGGCTTTCAGAGCATGGAAAC 40865 |||| ||||| ||||||||||||||||||||| |||||||||| || ||| |||||||| Sbjct 121 CGGGCTGTGCGAGGTAACCATGAGCAGATGATGATTGATGGGCTATCGGAGTATGGAAAC 180 Query 40866 GTCAATCACTGGCTGGTAAACGGTGGCGGTTGGTTCTTCAATCTCGACTATGACAAAGAG 40925 || || |||||||||| |||||| |||| |||||||||| ||| || ||||| |||||| Sbjct 181 GTTAACCACTGGCTGGAAAACGGCGGCGTGTGGTTCTTCAGTCTTGATTATGAAAAAGAG 240 Query 40926 GTG 40928 ||| Sbjct 241 GTG 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141917437013120