Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq752483 91.5 1e-13 >seq752483 Length=2742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || |||||||| || || |||||||| || ||| || Sbjct 1440 ATGCAGATTTTTGTCAAGACATTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 1499 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||| |||||| | || |||||| Sbjct 1500 GACACCATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAG 1559 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || || |||| ||| || |||| ||||||||| Sbjct 1560 CAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAAC 1619 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||||||||| ||||| || Sbjct 1620 ATCCAAAAAGAATCCACTCTTCA 1642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || || || ||||| || || || ||| Sbjct 984 ATGCAGATCTTTGTGAAAACTCTTACTGGGAAGACCATAACTCTAGAGGTCGAGAGTTCT 1043 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| ||| ||| ||||| ||||| | || ||| ||| Sbjct 1044 GACACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACCAGACCAA 1103 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || |||||| |||||||| || |||| ||||| ||| Sbjct 1104 CAGAGGCTTATCTTTGCTGGGAAACAACTGGAAGATGGCCGCACCTTGGCTGATTACAAC 1163 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || || || || || ||| Sbjct 1164 ATTCAGAAGGAGTCCACCCTCCAC 1187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415976981481180