Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1746187 102 5e-16 seq36911 98.7 6e-15 seq7669 98.7 6e-15 seq763614 96.9 2e-14 seq40195 95.1 8e-14 seq39955 93.3 3e-13 seq1743593 87.8 1e-11 seq752332 87.8 1e-11 seq750497 87.8 1e-11 seq2155 87.8 1e-11 seq754402 86.0 4e-11 seq4069 86.0 4e-11 >seq1746187 Length=8464 Score = 102 bits (112), Expect = 5e-16 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC- 474705 || || |||||| | ||| |||||||||| ||||| | ||| ||| | | ||| Sbjct 3066 AAGCAGTTTTCAGCTGAAGAAATTTCTTCCATGGTCCTCATCAAGATGCGCGAGATCGCT 3007 Query 474706 GAGCTCATATCTTGGAC-AAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTA 474764 ||| | || || ||| || | ||| | || || | || || || || || || | Sbjct 3006 GAGG-CTTACCTAGGAGTAACTATTAAGA-ACGCCGTTGTCACCGTGCCTGCTTACTTCA 2949 Query 474765 ATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTAC 474824 ||||||| || | || ||||| || ||||| || ||||| ||||||||||| | | Sbjct 2948 ATGATTCCCAGAGGCAGGCAACCAAGGATGCTGGTGTTATTGCTGGTCTTAATGTGATGC 2889 Query 474825 GTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||| || ||||| ||||| ||||| ||| |||| ||||||||||| ||||| Sbjct 2888 GTATCATCAATGAGCCAACCGCAGCTGCAATTGCCTATGGTCTTGACAAGAA 2837 >seq36911 Length=12065 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| ||||| || || ||| || || | ||||||||||| || || Sbjct 7761 ACGGAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTATAATCAGCAAGGGT 7820 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| ||||||||||| || || || || || || ||||| || Sbjct 7821 ACGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGGCGCTGCTGGTCTGGGGGAATGCC 7880 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || ||||| |||||| ||||| || || | | | ||||| Sbjct 7881 CTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGGATTCCACCTCAAG 7940 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||| ||||| || || || || Sbjct 7941 TGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTG 7979 >seq7669 Length=6130 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || ||||| || || || || | || || ||||| || || Sbjct 6009 ACGAAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGT 5950 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||| ||||| |||||||| || || || || || || ||||| || || Sbjct 5949 GCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCC 5890 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || ||||| ||||| ||||| || || | | ||||| Sbjct 5889 CTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATGGTGTCCGAGGACTCCACCTCAAG 5830 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||| |||||||||||||| || Sbjct 5829 GGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAAATCTG 5791 >seq763614 Length=10155 Score = 96.9 bits (106), Expect = 2e-14 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||||||||| || || ||||| || || | |||||| || ||||| || | | Sbjct 8752 TTACTGTTCCAGCGTACTTCAATGACTCGCAGAGAACAGCAACAAAGGATGCTGGCCGTA 8693 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 ||||||| || | ||| | || ||||| ||||| ||||| || || | |||||||||| Sbjct 8692 TTGCAGGACTGGAAGTTCTCCGCATTATAAATGAGCCAACTGCTGCATCTCTTGCTTATG 8633 Query 474864 GTCTTGATAAGAA 474876 || |||| ||||| Sbjct 8632 GTTTTGAGAAGAA 8620 >seq40195 Length=9226 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || || |||||||| |||||||| || | || || || || |||| Sbjct 4297 ATGCTGTTGTCACAGTCCCTGCATATTTCAATGATTCGCAGAGGCAGGCTACCAAGGATG 4356 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || | ||||| | ||||| || ||||| |||||||| || || Sbjct 4357 CTGGTGTCATTGCTGGCATCAATGTCCTCCGTATCATCAATGAGCCAACAGCTGCTGCCA 4416 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 4417 TTGCTTATGGTCTTGACAAGAA 4438 >seq39955 Length=16318 Score = 93.3 bits (102), Expect = 3e-13 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 321775 ATGTAAGATTTTTTGCAATAATTAATGGTAAACCAACTTCATTCAGTGC-AATATTTGGA 321833 |||| ||||| |||||| | |||| | || | || || || || |||||| ||| Sbjct 2594 ATGTCAGATTCAAAGCAATACTCCATGGCACCCCCAATTGAT-CAATGTTAATATTCGGA 2536 Query 321834 TCAGATGTGATAACTGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTA 321893 || | |||||| || |||||| | || | ||||||||| || ||||| | ||||||||| Sbjct 2535 TCTGGTGTGATGACAGTACGAGCTGAGAAATCAACACGCTTCCCCATTAAGTTTCCTCTA 2476 Query 321894 ATACGACCTTCTTTT 321908 ||||||||||||||| Sbjct 2475 ATACGACCTTCTTTT 2461 >seq1743593 Length=9171 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | || || || ||||| | ||||||||||| ||||| Sbjct 1549 ACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGAGT 1608 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||| ||||| || ||||| || || || ||||| || || || || || Sbjct 1609 GCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGGTCCGGCGGGATACC 1668 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| || || |||||| |||||| ||||| || |||| | | | |||| Sbjct 1669 CTCCTTATCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAAGACTCGA-CCTCAA 1727 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || |||||||| ||||| || || || || Sbjct 1728 GTGTGATGGTCTTGCCGGTGAGCGTCTTCACAAAGATCTG 1767 >seq752332 Length=10290 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || ||||| || || || || || | || || ||||| || || Sbjct 5292 ACGCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGT 5351 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || |||||||||||||| || ||||| || || || |||||||| || Sbjct 5352 ACGGCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCC 5411 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| |||||| ||||| || |||| | | | |||| Sbjct 5412 CTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGACGACTCCA-CCTCAA 5470 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || || || ||||| || || || || Sbjct 5471 GGGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTG 5510 >seq750497 Length=14261 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || || | ||| || || ||||| |||||||| || || || || Sbjct 11340 TTGTAGTCAGCAAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGC 11399 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || ||||| ||||||||||| || |||||| |||||| ||||| || || Sbjct 11400 TGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCC 11459 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||| ||||| || || || |||||||| ||||| || || || || Sbjct 11460 GAGGACTCAACTTCCAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTG 11515 >seq2155 Length=11791 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 290828 CCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCA 290887 ||||||| || | ||| || || || ||||| ||||| || | || || || || ||| Sbjct 5077 CCATATGACAAAGCAGCAGCAGTGGGCTCATTGATAATCCTCATAACCTCCAGTCCAGCA 5136 Query 290888 ATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTA 290947 || | | | ||| || ||||||||||| |||||||| |||||||| ||||| ||| Sbjct 5137 ATCCTACCAGCATCCTTGGTAGCCTGGCGTTGAGCATCATTGAAATAAGCTGGGACAGTA 5196 Query 290948 ATAACAGCTTT 290958 |||||||| || Sbjct 5197 ATAACAGCCTT 5207 >seq754402 Length=7781 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || ||||| || ||||| || || | || || || || |||| Sbjct 4271 ATGCTGTTGTCACTGTACCTGCATACTTCAATGACTCGCAGAGGCAGGCTACCAAGGATG 4330 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || | ||||| | ||||| || || || |||||||| || || Sbjct 4331 CTGGTGTCATTGCTGGCATCAATGTCCTCCGTATCATCAACGAGCCAACAGCTGCTGCCA 4390 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 4391 TTGCTTATGGTCTTGACAAGAA 4412 >seq4069 Length=14202 Score = 86.0 bits (94), Expect = 4e-11 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 321744 TCAATATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGT 321803 ||||| |||| | |||||| |||| |||| ||||| |||||| | |||| Sbjct 3328 TCAATGTTATATGGAGTAACAGTTTCTGGGTATGTCAGATTCAAAGCAATACTCCATGGC 3387 Query 321804 AAACCAACTTCATTCAGTGCA-ATATTTGGATCAGATGTGATAACTGTACGACCAGACAT 321862 | || | || || || || ||||| ||||| | |||||| || |||||| | || | Sbjct 3388 ACCCCCAATTGAT-CAATGTTGATATTCGGATCTGGTGTGATGACGGTACGAGCTGAGAA 3446 Query 321863 ATCAACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTT 321908 ||||||||| || ||||| | ||||||||||| |||||||| ||| Sbjct 3447 ATCAACACGCTTCCCCATTAAGTTTCCTCTAATCCGACCTTCCTTT 3492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3190178343226160