Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq45179 457 1e-123 seq57095 297 2e-75 seq213450 161 1e-34 seq856698 143 3e-29 seq155648 132 5e-26 seq761979 120 3e-22 seq79754 107 2e-18 seq36335 105 7e-18 seq34999 91.5 2e-13 seq57123 87.8 2e-12 seq1813671 86.0 7e-12 seq759025 86.0 7e-12 >seq45179 Length=9647 Score = 457 bits (506), Expect = 1e-123 Identities = 553/750 (74%), Gaps = 2/750 (0%) Strand=Plus/Minus Query 162381 CGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTT 162440 || ||||| ||| | || || || ||||||||||| || |||||||| || |||||||| Sbjct 9637 CGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTA 9578 Query 162441 ATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAA 162499 |||||||||||| | ||||| |||||||| || || || || | | || ||||| || Sbjct 9577 ATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAA 9519 Query 162500 TGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTT 162559 ||| || | ||||| ||||| |||||||| || ||| ||| || ||||| ||||| | Sbjct 9518 TGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACT 9459 Query 162560 GGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCT 162619 ||| ||||| |||||||| || ||| || || || ||||| || || |||||| | Sbjct 9458 GGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCAT 9399 Query 162620 GCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGC 162679 || ||| ||||||| || ||||| |||||| | || || ||||| |||||||| || || Sbjct 9398 CCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 9339 Query 162680 AGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACT 162739 || | | || | || |||| | ||||||||||||| || || ||||| || || Sbjct 9338 CGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCT 9279 Query 162740 GTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGA 162799 | || || || || ||||| || || || ||| || | || || | ||||| Sbjct 9278 ATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 9219 Query 162800 AACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAG 162859 ||| ||||| ||||| ||||| |||||||| ||||| || || || ||| |||||||| Sbjct 9218 AACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTC 9159 Query 162860 TAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAG 162919 || || |||||||| |||||||||||||| ||||| ||||||| ||| | |||| || Sbjct 9158 CAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 9099 Query 162920 TTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGA 162979 | |||| || | |||| | ||||| || | ||||| || |||||||| || || || Sbjct 9098 TGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGA 9039 Query 162980 AGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAA 163039 | | ||||| || ||||| ||||| |||||||| ||||| || || || |||||| | || Sbjct 9038 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAA 8979 Query 163040 TGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCC 163099 || || |||| || ||| | ||| | ||| || |||||||| || || | ||||| Sbjct 8978 CGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCC 8919 Query 163100 TGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 ||| ||||| | ||| | || |||||||| Sbjct 8918 TGAGGAGGTTCTACCACGTGGAAACGCTCT 8889 >seq57095 Length=8353 Score = 297 bits (328), Expect = 2e-75 Identities = 371/506 (73%), Gaps = 2/506 (0%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || || |||||| | || ||||| || || || ||||| | || |||||||| || || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | | || || | ||| || || || |||||| | | ||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || || |||||||| || || ||||||| | | ||||||||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 || |||||||||||| |||| ||| ||||| || ||||| ||||||| ||||| || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 |||||||| ||| | | || || ||| | ||||| |||||||||| | || |||| Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | |||||| | |||| | | ||| ||||||||||||||||||||| || ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 |||||| ||||| ||||||||| || ||||| || |||||||| || || || | ||| Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 161295 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 161354 || ||| || | || ||| | |||||||| || ||||||| |||||| | || || Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 161355 CTCTGGTACGTTCAACTACATGCTTG 161380 ||||||||| ||||||| ||| ||| Sbjct 26 CTCTGGTACTTTCAACTTTATGATTG 1 Score = 145 bits (160), Expect = 8e-30 Identities = 183/249 (73%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 162188 || |||||| | ||| ||||||||||||||||| || |||||||| || | || ||| Sbjct 8101 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 8160 Query 162189 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 162248 || ||||||| | ||| | ||||||||| |||| ||||| ||||| || || |||| Sbjct 8161 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8220 Query 162249 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT-ACTGCGGCAGT 162307 ||||| || ||| | || ||||||||| | || ||| || |||||| || || ||||| Sbjct 8221 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAA-TTTCTTAACCGCAGCAGT 8279 Query 162308 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCA 162367 |||||| || || | | | | || ||| | |||| |||||||| || || | || Sbjct 8280 TTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACA 8339 Query 162368 AGGGGACTT 162376 ||| || || Sbjct 8340 AGGAGATTT 8348 >seq213450 Length=3525 Score = 161 bits (178), Expect = 1e-34 Identities = 220/306 (72%), Gaps = 7/306 (2%) Strand=Plus/Plus Query 161292 TGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGG 161351 ||| || ||| || | || || | |||||||| || ||||||| |||||| | || Sbjct 3222 TGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGG 3281 Query 161352 CATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCA 161411 ||||||||||| ||||||| ||| |||| || || ||||||||||||| | ||||| Sbjct 3282 AATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCA 3341 Query 161412 CCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCA 161471 | || || ||| | || ||||| ||||| || | |||||| || |||| ||| ||||| Sbjct 3342 TCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCA 3401 Query 161472 CGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTA 161531 ||||| ||| || | || | | ||||| || ||||| || ||| || | Sbjct 3402 TGGTTCCATGG-TAGTT------TGATCAGGGAAACTACTGAAAATGAATCCGCTAATGA 3454 Query 161532 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTT 161591 |||||||| || |||||||| |||||||| || || || || ||||| || || || || Sbjct 3455 GGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTT 3514 Query 161592 CGGTCG 161597 || || Sbjct 3515 TGGCCG 3520 >seq856698 Length=257 Score = 143 bits (158), Expect = 3e-29 Identities = 121/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 161719 AATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGG 161778 ||||||||||| |||||||| ||| | ||||||||||| ||| ||||| || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 161779 GCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCAC 161838 || || | ||||||||||| ||||| |||||||| ||||| || || ||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 161839 AACTTCCCTCTTGACCTTGCTGCTGCTGA 161867 ||||||||||| ||| | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq155648 Length=2022 Score = 132 bits (146), Expect = 5e-26 Identities = 214/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 162513 TCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCC 162572 || ||||| |||||| | || ||| || || ||||| ||||| ||| ||||| Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 162573 TGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAA 162632 |||||||| || ||| || || || ||| | || || |||||| | || ||| ||||| Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 162633 GGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGT 162692 || || ||||| |||||| | || || ||||| |||||||| || || || | | || Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 162693 GGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGC 162752 | | ||| | ||||||||||||| || || ||||| || || | || || || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 162753 GAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATG 162812 || ||||| || || || ||| || | || || | |||||||| ||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 162813 GTTACTGC 162820 || ||||| Sbjct 1722 GTCACTGC 1715 >seq761979 Length=10221 Score = 120 bits (132), Expect = 3e-22 Identities = 179/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 161014 ATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTT 161073 |||| ||||| || || |||| | | |||| |||||| || |||||||||||| || Sbjct 466 ATTCATGAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCTCTGGTGCTATT 407 Query 161074 ATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTG 161133 || ||| |||| | | ||| ||||||| ||||| || || ||| ||| | Sbjct 406 ATTCCTACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAGTTGCATCGGTT 347 Query 161134 GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGC 161193 || || ||| | ||||| |||||||||| | || || | || |||||| | |||| Sbjct 346 GATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTACACTTCTTACTTGGT 287 Query 161194 ATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGG 161253 | | ||| |||||| |||||| ||||||| || ||||||||| |||| |||||| Sbjct 286 GTAGCTTGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGGGTATGCATCCTTGA 227 Query 161254 ATTTGCGTAGCATA 161267 ||| || ||||| Sbjct 226 ATTGTTGTTGCATA 213 >seq79754 Length=5746 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || | || || | |||||||| ||||| ||||| ||||| ||||| || ||| Sbjct 4808 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGTTTTTGG 4867 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || || || | | |||||||| || || ||||||| |||||||||||||| ||| Sbjct 4868 TCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGCTATTT 4927 Query 162894 GTTCCCGTCATGGGTCTCTGGACAAGTTCTAT 162925 || | ||||| ||| | |||| ||| |||| Sbjct 4928 GTACTCGTCACTGGTTTATGGATGAGTGCTAT 4959 >seq36335 Length=20465 Score = 105 bits (116), Expect = 7e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 161297 TGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCT 161356 ||||| || | || ||| | |||||||| || ||||||| |||| | | || |||| Sbjct 3532 TGTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCT 3473 Query 161357 CTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCT 161416 | ||||| ||||||| ||| |||| ||||| |||||||||||||| || ||||| || | Sbjct 3472 CCGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCAT 3413 Query 161417 TCCATATGCTCGGCGTAG 161434 |||| ||| | || |||| Sbjct 3412 TCCACATGTTAGGTGTAG 3395 >seq34999 Length=3418 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 162129 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 162188 || |||||| | ||| ||||||||||||||||| || |||||||| || | || ||| Sbjct 498 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 557 Query 162189 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGG-ACTACTTTCGTCACGAGTTG 162247 || ||||||| ||||| | ||||||||| ||| ||| | | | || || ||| Sbjct 558 CCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTATAGGGAAAAAAAATTGTAACTTCTTG 617 Query 162248 GTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGT 162284 |||||| || | | | || ||||||||| | || ||| Sbjct 618 GTATACCCATGAATTGGCAAGTTCCTATTTGGAAGGT 654 >seq57123 Length=6725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| ||||||| ||| Sbjct 304 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACAGGTTCAAAT 245 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 244 CCTGTCATCCCTACCTAT 227 >seq1813671 Length=280 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 ||| |||||||||||| ||||| || || ||||||||| ||||| ||||||||| || Sbjct 55 TTATATGGGTCGTGAGCGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGT 114 Query 161262 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCT 161313 ||||| || |||| ||| || || || | ||| || ||| || | || ||| Sbjct 115 TGCATATTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCT 166 >seq759025 Length=5890 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 161676 CTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAA 161735 |||||||||||| | || | || || ||||| |||||||| ||||||||||| ||||| Sbjct 4928 CTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAA 4987 Query 161736 CCAGTCTATCGTTGATAGTCAGGGT 161760 ||| ||| | ||||||||||| ||| Sbjct 4988 CCAATCTGTAGTTGATAGTCAAGGT 5012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535296769207200