Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq57095 280 4e-71 seq213450 156 1e-33 seq36335 116 1e-21 seq788035 96.9 1e-15 seq856698 95.1 4e-15 seq761979 91.5 4e-14 >seq57095 Length=8353 Score = 280 bits (310), Expect = 4e-71 Identities = 363/496 (73%), Gaps = 4/496 (1%) Strand=Plus/Plus Query 18317 CATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCC 18376 ||| || ||||||||||| || || | ||||||||||||||| || || ||||| || Sbjct 5 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACC 64 Query 18377 AAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACA 18434 || ||| |||| | ||||| || | || | |||||||| || || || ||||| |||||| Sbjct 65 AATAGGGTAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCAACA 122 Query 18435 CAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCT 18494 |||||| ||||||||||| || | ||||||||||||| | || ||||| ||| Sbjct 123 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 182 Query 18495 GCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCAC 18554 || | || | | ||||| | ||||| || | ||| || || || || ||||||||| Sbjct 183 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCAC 242 Query 18555 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 18614 || || | | |||||||||||| |||||||| ||||| | ||||| || ||| | Sbjct 243 TCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTA 302 Query 18615 GGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCA 18674 || | || || || || || || ||||||||||| ||||| | || || ||||||||| Sbjct 303 GGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCA 362 Query 18675 CGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCT 18734 ||||||||||| || || || ||||| ||||| | || || || | |||| | | || | Sbjct 363 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 422 Query 18735 GCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTT 18794 ||||| || | | ||||||||| | || || ||||| || | ||| || || || | Sbjct 423 GCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCA 482 Query 18795 GTACTCGTAACCCAGT 18810 || || || | ||||| Sbjct 483 GTGCTAGTTATCCAGT 498 >seq213450 Length=3525 Score = 156 bits (172), Expect = 1e-33 Identities = 214/297 (72%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 18099 CCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTATAT 18158 ||||| || |||||||| || ||||||||||| |||||||| ||||| |||||||| || Sbjct 3517 CCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAA 3458 Query 18159 CCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGACTT 18218 || | || || ||| ||||| ||||| || || | || || || | Sbjct 3457 CCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCA------AACTACCATGGAA- 3405 Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| ||||| | || ||||||| || || ||||| | ||| || || Sbjct 3404 CCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACATGTGAAAT 3345 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 ||||||||| ||| ||||| || | || ||||| | ||| || ||||||||||| Sbjct 3344 AGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGTACCAGAG 3285 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAA 18394 || || | ||||||||||||||| || | ||||| |||| || |||| | ||||| Sbjct 3284 ATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCAAGAAA 3228 >seq36335 Length=20465 Score = 116 bits (128), Expect = 1e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 18261 ACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATG 18320 ||||| | ||| ||||| |||||||||||||| ||||| || || |||||||| | ||| Sbjct 3397 ACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATA 3456 Query 18321 AAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAA 18380 || |||||||||||| || || | | ||||||||||||| || || ||||| |||| | Sbjct 3457 AAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAATA 3516 Query 18381 GGATAAA 18387 || |||| Sbjct 3517 GGGTAAA 3523 >seq788035 Length=1366 Score = 96.9 bits (106), Expect = 1e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 18034 AAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGATGA 18093 |||||||||||||||| |||| | | |||||||| |||||||| |||||||| | Sbjct 1084 AAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTA 1025 Query 18094 GTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATT 18153 | |||| || |||| ||| || ||||| ||||| || ||||| ||||| ||||||| Sbjct 1024 ATTGGCCAATATAACCATTAGCAGCCACAATGTTATAAGTTTCTTCCTCTTGACCAAATT 965 Query 18154 TATATCCA 18161 | || ||| Sbjct 964 TGTAACCA 957 >seq856698 Length=257 Score = 95.1 bits (104), Expect = 4e-15 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 |||||| ||||| |||||||| ||||||||||| || ||||| ||||| | |||||||| Sbjct 143 AGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTT 84 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 83 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACA-- 26 Query 17951 GGATTGGTTGAAGTTGAATCCATT 17974 ||||||||||| ||||| ||||| Sbjct 25 -GATTGGTTGAAATTGAAACCATT 3 >seq761979 Length=10221 Score = 91.5 bits (100), Expect = 4e-14 Identities = 179/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 18424 AATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTC 18483 |||| |||||| ||| || || ||||||| || | ||||||||||| | | | | Sbjct 211 AATATGCAACAACAATTCAAGGATGCATACCCAGACGGAAACTAAGTTCCTACTCACAAC 270 Query 18484 CCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGT 18543 |||| ||| || | || | | ||||| || | ||| || | ||| || || || | Sbjct 271 CCATATAACAAGCTACACCAAGTAAGAAGTGTAAAAAAATTAGCTCATAAGGACCACCAT 330 Query 18544 TATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTG 18603 | ||||||||||| || | | |||| ||| || |||||||| ||||| | ||| Sbjct 331 TGTATAACCACTCATCAACCGATGCAACTTTTCAAATTGGGTAAAAGTGCAATTTGATCA 390 Query 18604 CGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTG 18663 | | || | || | || || || || || || |||||| |||| ||||| | | | Sbjct 391 CCGTCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTTCATAAAGTAAAGAACTAG 450 Query 18664 AGACAGGCTCACGAATACCATCTAT 18688 | ||| | ||| ||||| |||| || Sbjct 451 AAACATGTTCATGAATATCATCAAT 475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148050870191480