Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq45179 464 8e-126 seq57095 271 9e-68 seq213450 161 1e-34 seq155648 154 2e-32 seq352821 127 3e-24 seq79754 113 6e-20 seq856698 109 7e-19 seq159272 96.9 4e-15 seq50862 95.1 1e-14 >seq45179 Length=9647 Score = 464 bits (514), Expect = 8e-126 Identities = 547/740 (74%), Gaps = 0/740 (0%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || |||||||| || ||||| Sbjct 8889 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 8948 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||| ||||| | ||| || || || || || || || |||||||| ||| Sbjct 8949 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 9008 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| ||||||||||| ||||| | | Sbjct 9009 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCACGTAAG 9068 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| | |||| | || || | ||| |||| | ||| | || || ||||| Sbjct 9069 TTCAGAGCCAAGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAAT 9128 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 |||||||||||||| ||||| | ||||| ||| |||| |||||||||||| ||||| Sbjct 9129 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAA 9188 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 9189 AAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 9248 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| |||||| || ||| | |||||||| || || || | || || || Sbjct 9249 AAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCTACGGTTGCTCCATGAATA 9308 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | || | | || ||||| ||||||||||| |||||||| | | Sbjct 9309 GCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAAC 9368 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||| || | ||||| |||||||||||| || ||||| Sbjct 9369 GTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATCGCTGCTACGCCAAAA 9428 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || || || ||| |||||| Sbjct 9429 CTCGGCGCAAAGAACCAACCAGATTGCCCCAGTGGATAAATAAGGAATACAGAAACAAAA 9488 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || |||||||| | || ||||| || || || | | || ||| ||| Sbjct 9489 ACAGCAATTGGACCAGAGAATGAGATTGCATTATAAGGCCGCAATTGAACAGACCGAGCA 9548 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || ||||| || | ||||||||| || || ||||| || ||||||||||| |||||| Sbjct 9549 AGTTCAAATTGGCGTAACATGAAACCTATTAGTGCAAAAGCCCCGTGGAGAGCTACAAAA 9608 Query 102430 GCCCAGAGTCCCCCAAGTTG 102449 | ||| || || || | ||| Sbjct 9609 GTCCATAGACCGCCTAATTG 9628 >seq57095 Length=8353 Score = 271 bits (300), Expect = 9e-68 Identities = 372/516 (72%), Gaps = 3/516 (1%) Strand=Plus/Plus Query 103662 AGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGG 103721 ||||||| || || || || || ||||||||| |||| || || |||||||||| | Sbjct 10 AGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAG 69 Query 103722 GGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCC 103781 |||| | |||||| || || | ||||| ||||||||||| || ||||| ||| |||| Sbjct 70 GGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCC 129 Query 103782 AGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATGC 103841 | |||||||| ||||||||| | | |||||||||||| |||||||| | | | Sbjct 130 AAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACAC 189 Query 103842 CAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAA 103901 ||| | |||||| | || | || | |||||||||| || || | ||||||||||| Sbjct 190 CAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAA 249 Query 103902 GAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAA 103961 |||||| ||||||||||| || || ||||| | || || || || | |||| || Sbjct 250 CAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAA 309 Query 103962 CTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGC 104021 ||||||||||| || ||||| || || | | ||||||| || || |||||||| | Sbjct 310 TAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATAC 369 Query 104022 CGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGCC 104080 | || ||||| || ||||| || || | ||| || | || || |||| ||||| | | Sbjct 370 CATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-AGTTGCGGTC 428 Query 104081 AACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGTCGAT 104140 || | || |||||||||| ||||||||||| || | || ||||| || | || Sbjct 429 AATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTA 488 Query 104141 GTAACCCACTCGCAGAAGTTATCCCACGAGGATTGT 104176 || | ||| | ||||||| | ||||| ||| |||| Sbjct 489 GTTATCCAGTTGCAGAAGCGACCCCAC-AGGCTTGT 523 Score = 122 bits (134), Expect = 1e-22 Identities = 177/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 102463 AAATCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCA 102522 ||||||||||| ||||| || ||||| ||||| | | ||| || | | | | ||| Sbjct 8348 AAATCTCCTTGTGCTTCTGGCCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCA 8289 Query 102523 GGCGTTGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCG 102582 || || || || || || || | ||||||| |||||| | || | || | || Sbjct 8288 GGGGTAGAAACTGCTGCGGTTAAGAAATTACAACCTTCCAAATAGGAACTTGCCAATCCA 8229 Query 102583 TGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAA 102642 ||||||||||| ||||| |||| || || || |||| ||| ||||| | |||| |||| Sbjct 8228 TGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCCCCTAAAGCGAAATAA 8169 Query 102643 GCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATC 102702 ||| ||||| || | ||| |||||||| || ||||| || || || || | | | | Sbjct 8168 GCACAAGGAAAGAGCAATAGGCCAGACCATCCTACAAAAACGAAACGGTCCCTTCGTAAC 8109 Query 102703 CAGTCATCCA 102712 |||||||||| Sbjct 8108 CAGTCATCCA 8099 >seq213450 Length=3525 Score = 161 bits (178), Expect = 1e-34 Identities = 221/308 (72%), Gaps = 7/308 (2%) Strand=Plus/Minus Query 103433 AAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAAC 103492 || || || || ||||||||||| || || || || || |||||||||||||| || || Sbjct 3523 AATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAAT 3464 Query 103493 TTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGCGAGGACGTAACA 103552 |||||||| | || |||||| ||||||| || || | | || | || || Sbjct 3463 TTGTAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCA------AACTACCA 3410 Query 103553 AGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATG 103612 | ||||| ||||||||| |||| || ||||| |||| || ||||| || || | |||| Sbjct 3409 TG-GAACCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACATG 3351 Query 103613 TGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTT 103672 || || | ||||| | ||||| || || | || || || | ||| ||||||| || Sbjct 3350 TGAAATAGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGTA 3291 Query 103673 CCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAG 103732 || || || || ||||||||| |||| || || |||||||||| ||| || | |||| Sbjct 3290 CCAGAGATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCAAG 3231 Query 103733 AATACTGC 103740 || || || Sbjct 3230 AAAACAGC 3223 >seq155648 Length=2022 Score = 154 bits (170), Expect = 2e-32 Identities = 219/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 102019 GCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTT 102078 || || |||||||||||||| ||||| |||| || | | || || ||| || ||| Sbjct 1715 GCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGGAAGGTATTT 1774 Query 102079 GCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGC 102138 || |||||| || ||| | |||||||| || || || | || || || || | || Sbjct 1775 GCACCATCACCGTCCTCAAATAGAGTGTTTTCTACGGTTGCTCCATGAATAGCGCATGGC 1834 Query 102139 AGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTA 102198 || | | || | | || ||||| ||||||||||| |||||||| | |||||| ||| Sbjct 1835 AGAGTCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTA 1894 Query 102199 TGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCA 102258 || || || || | ||| || | ||||| ||||||| ||| || ||||| |||||| Sbjct 1895 TGAAATCCTTGGAAGAAAAGGATGAATCGCAATATCGTTGCCACGCCAAAACTCGGCGCA 1954 Query 102259 AAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATA 102318 |||||||||| || || || | ||||| || || || || ||||||| ||| || Sbjct 1955 AAGAACCAACCAGATTGCCCCGGTGGATAAATAAGGAATACGTAAACAAAAATAGCAATT 2014 Query 102319 GGCCCAGA 102326 || ||||| Sbjct 2015 GGACCAGA 2022 >seq352821 Length=202 Score = 127 bits (140), Expect = 3e-24 Identities = 133/175 (76%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 101731 ACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCGACTGGTGCCAACCATGCACGT 101790 ||||| ||||| |||| || |||||||| || ||||| | ||||| ||| ||||| Sbjct 202 ACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCCTGAGCTGCCATCCACGCACGA 143 Query 101791 AGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCT 101850 | ||| || || || || || || || |||||||| || || || || |||||||| ||| Sbjct 142 ATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTTTCAAATTCAGGATCTTCCGCT 83 Query 101851 GCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAA 101905 || | ||| || ||||| ||||||||||| ||||| | ||| ||||| | |||| Sbjct 82 GCACGGATTTCCTGGGAAACAAAGTCATAGGCACGTAAGTTCAGAGCCAAGCCAA 28 >seq79754 Length=5746 Score = 113 bits (124), Expect = 6e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 ||||| |||||||||||||| ||||| | ||||| ||| |||| | |||||||||| Sbjct 4929 ACAAATAGCATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACATCAAAGATTTGG 4870 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 ||||| |||||||| || || |||||||||||||| ||||| |||| || | | || Sbjct 4869 GACCAAAAACGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAA 4810 Query 102064 GCTTTGAAAGTGTTTGCTTGATCAC 102088 || ||| || ||||| | ||||| Sbjct 4809 GCACGGAAGGTATTTGCATCATCAC 4785 >seq856698 Length=257 Score = 109 bits (120), Expect = 7e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| | ||| || |||||||||||||| ||||| || ||||| ||||||||||| | Sbjct 147 CAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 88 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 | ||| ||||||| | || ||||| || || | || ||||| |||| ||||| | Sbjct 87 GGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTA 28 Query 103290 TGGACTGGTTGAAGTTGAATCCGTT 103314 || |||||||| ||||| || || Sbjct 27 CAGATTGGTTGAAATTGAAACCATT 3 >seq159272 Length=944 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 102166 CCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAAT 102225 ||||||||||| |||||||| | ||||| ||||| || || || | ||| || | |||| Sbjct 143 CCCATCATATGAAATGGGTTCAATGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAAT 202 Query 102226 CTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGA 102285 | |||||||||||| | ||||| | |||| |||||||| || || || || || Sbjct 203 CGAAATATCGCTGCTATGCCAAAACTAGATGCAATGAACCAACCAGATTGCCCAAGTGGG 262 Query 102286 TAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGA 102328 || || || || ||| |||||| | | || || ||||||| Sbjct 263 TAAATAAGGAATACAAAAACAAAAGGAACAATTGGGCCAGAGA 305 >seq50862 Length=22782 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 |||||||| ||||| || || | ||||| |||||||||||||| |||||| ||||| Sbjct 1882 AGCATAAA-AAATGTAAGCAACATTTATTGGAAAATGCAATACCAATGATTTGGGACCAA 1940 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGT 102053 |||||||| | | |||||||||||||| ||||| ||||||| Sbjct 1941 AAACGGTTAGTAATTACCATTGAATAAGTTTCTTCAACTTGTGT 1984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619113677493600