Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq57095 224 3e-54 seq213450 165 2e-36 seq788035 111 5e-20 seq36335 102 2e-17 seq856698 91.5 4e-14 seq837997 89.7 1e-13 >seq57095 Length=8353 Score = 224 bits (248), Expect = 3e-54 Identities = 337/476 (71%), Gaps = 2/476 (0%) Strand=Plus/Plus Query 21958 AGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACG 22017 ||||||| || || || || || || |||||| |||||||||| || || |||| | Sbjct 10 AGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAG 69 Query 22018 GATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCC 22077 | |||| | ||| |||||||| ||||| || |||||||| || || |||||| |||| Sbjct 70 GGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCC 129 Query 22078 AGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGC 22137 | || | ||| || || || | |||||||||||||| || ||||| ||| | || | Sbjct 130 AAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACAC 189 Query 22138 CAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAA 22197 ||| | |||||| | || | || | | ||||| || ||||| | ||| ||||||| Sbjct 190 CAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAA 249 Query 22198 GTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGA 22257 | |||||||||||||||||||| ||||| | |||||| || | | |||| | Sbjct 250 CAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAA 309 Query 22258 CGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTC 22317 || || || || || ||||| ||||| | | || |||| || || || || || | Sbjct 310 TAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATAC 369 Query 22318 CATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CA 22376 |||| || || || || || || | | |||||||||||||| || || |||| || Sbjct 370 CATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCA 429 Query 22377 AGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGT 22432 | ||| | || ||||| | || ||||||||||| | |||||||| || | ||| Sbjct 430 ATAAGGTA-GGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGT 484 >seq213450 Length=3525 Score = 165 bits (182), Expect = 2e-36 Identities = 221/308 (72%), Gaps = 7/308 (2%) Strand=Plus/Minus Query 21732 CGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTG 21791 || |||||||| || |||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 3520 CGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTG 3461 Query 21792 TAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGG 21851 ||||| | || || | | |||||| || || | ||| | |||| | Sbjct 3460 TAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCCC-------TGATCAAACTACCATG 3408 Query 21852 CTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGA 21911 ||| ||||||||| ||| | || | ||||| || || ||||| | ||||||| Sbjct 3407 GAACCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACATGTGA 3348 Query 21912 AAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCG 21971 || ||||||||| || |||||||| | ||| || || | ||| ||||||| || || Sbjct 3347 AATAGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGTACCA 3288 Query 21972 GATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAAC 22031 || || || || |||||| |||||||||| || || |||| || |||| | ||| Sbjct 3287 GAGATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCAAGAAA 3228 Query 22032 ACAGCAGT 22039 |||||||| Sbjct 3227 ACAGCAGT 3220 >seq788035 Length=1366 Score = 111 bits (122), Expect = 5e-20 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 21672 GCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGC 21731 ||||| | ||||| || | | ||| || || ||||| ||||||||||||||||| | Sbjct 1082 GCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTAAT 1023 Query 21732 CGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTG 21791 | |||| ||| || | |||||| ||||| || ||||| ||||||||||||||||| ||| Sbjct 1022 TGGCCAATATAACCATTAGCAGCCACAATGTTATAAGTTTCTTCCTCTTGACCAAATTTG 963 Query 21792 TAACCA 21797 |||||| Sbjct 962 TAACCA 957 >seq36335 Length=20465 Score = 102 bits (112), Expect = 2e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 21897 ACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATG 21956 ||||| | |||||| || ||||||||||| || |||||||| |||||||| || | ||| Sbjct 3397 ACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATA 3456 Query 21957 TAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAAC 22016 ||||||| || ||||| || || || ||||| |||||||||| || || |||| Sbjct 3457 AAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAATA 3516 Query 22017 GGATAAACAAGGAACACAG 22035 || |||| | ||||| || Sbjct 3517 GGGTAAATCAAGAACAAAG 3535 >seq856698 Length=257 Score = 91.5 bits (100), Expect = 4e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 ||| || ||||||||||| || || || |||||||| || || | |||||||| ||||| Sbjct 137 GTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCACG 78 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||| | || |||||||| || || || || | || | | | | | | ||||||||| Sbjct 77 GTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTT 18 Query 21596 AAAGTTGAAACCATT 21610 || ||||||||||| Sbjct 17 GAAATTGAAACCATT 3 >seq837997 Length=1373 Score = 89.7 bits (98), Expect = 1e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 21735 CCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAA 21794 |||||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||| Sbjct 105 CCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAA 46 Query 21795 CC 21796 || Sbjct 45 CC 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143050822827600