Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq37709 89.7 3e-13 >seq37709 Length=12305 Score = 89.7 bits (98), Expect = 3e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || |||||||||||||| || || | |||||| ||||||||||| | Sbjct 7146 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAGCGTGCAGTGTCATTGAAAACACGTA 7087 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | |||| | ||| ||| ||||| | | |||| | || || | | Sbjct 7086 GCATGGGAACAATTCCATTAGAAGTTCCATTTGTTCCACGAATGTAACTGCCAGTAGCCC 7027 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 | || |||| ||| | ||| || || ||||| |||| || | || || || Sbjct 7026 GGACATTGTGA-ATTGAGACACCAATCCCTCCAGCAGATTTGCTTATGGAAGCGCATTCC 6968 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||| | |||||||| ||||||| Sbjct 6967 GAGAGAGTATCATAAATTCCCTCAATGCTATCGTCTTTCAT 6927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247432129101500