Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq45179 259 5e-64
seq57095 246 3e-60
seq213450 147 2e-30
seq36335 120 3e-22
seq761979 104 3e-17
seq856698 93.3 5e-14
seq1743757 86.0 7e-12
>seq45179
Length=9647
Score = 259 bits (286), Expect = 5e-64
Identities = 520/775 (67%), Gaps = 21/775 (3%)
Strand=Plus/Plus
Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925
|||||| ||||| || | ||||| || || || ||||||| || ||| ||||| || ||
Sbjct 8885 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 8944
Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985
|| || || |||||| || | || || || || | |||||| || || || |||||
Sbjct 8945 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 9004
Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045
|||||| || || || ||||| ||||| | || || || || |||||||| || || |
Sbjct 9005 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCACG 9064
Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105
| ||| || || | || || | || |||| |||| | ||| |||| || ||
Sbjct 9065 TAAGTTCAGAGCCAAGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTAC 9124
Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165
|| | ||||| ||| ||||| | | ||| || ||||| || | |||||| || || ||
Sbjct 9125 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 9184
Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225
||| || | ||| || || | ||| |||||||||||| | || || || | || ||
Sbjct 9185 CCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 9244
Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285
| ||| || | | ||| ||| ||| ||| | | ||
Sbjct 9245 ACGGAAGGT---------ATTTGCACCATCA------------CCGTCCTCAAATAGAGT 9283
Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345
||| | || ||||| |||||||| || ||||| | || | |||| || ||| |||||
Sbjct 9284 GTTTTCTACGGTTGCTCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAAC 9343
Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405
|||||||| |||||||| ||||| || || || || ||||| | ||| | ||| |
Sbjct 9344 TCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAA 9403
Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465
||||| || ||||| || || || || || |||||||||| || || |||||
Sbjct 9404 TCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCAGATTGCCCCAGTGG 9463
Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525
||| || || || | | || || || || | ||||||||| || ||| || ||
Sbjct 9464 ATAAATAAGGAATACAGAAACAAAAACAGCAATTGGACCAGAGAATGAGATTGCATTATA 9523
Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585
||| | | ||| | || | |||||||| | | |||||||||||| ||| |
Sbjct 9524 AGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGC 9583
Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGA 123640
||| | || || | |||||||| |||||||||| || | ||| ||||||||
Sbjct 9584 AAAAGCCCCGTGGAGAGCTACAAAAGTCCATAGACCGCCTAATTGACACCAACGA 9638
>seq57095
Length=8353
Score = 246 bits (272), Expect = 3e-60
Identities = 337/468 (72%), Gaps = 2/468 (0%)
Strand=Plus/Plus
Query 124531 CATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACC 124590
|||||||||||||||||| ||||| || | |||||||||||||| || || |||||
Sbjct 5 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACC 64
Query 124591 AAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACA 124650
|| ||||| | ||||| ||||| ||||| | || || |||||||| ||||||
Sbjct 65 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGC 124
Query 124651 GATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGA 124710
|||||||| ||||| || | | | | |||||||||| | ||||| || |
Sbjct 125 AATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGC 184
Query 124711 AATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTC 124770
| ||||| | |||||| | || | | || ||||||||||||||| || ||||| ||
Sbjct 185 TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTC 244
Query 124771 ATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGG 124830
|||||||| ||| |||||||| |||||||| ||||| | |||||| || || | ||
Sbjct 245 ATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGG 304
Query 124831 AACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCT 124890
|| || ||||||||||| || ||||| ||||| | |||||||| | || || || |
Sbjct 305 AATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACG 364
Query 124891 GATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTG 124949
|| || || ||||| || ||||| || || || || || | || || ||| | | ||
Sbjct 365 AATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAGTTG 423
Query 124950 CTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAA 124997
| || | |||| || ||||| | |||||| ||||| || | ||||
Sbjct 424 CGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAA 471
Score = 109 bits (120), Expect = 6e-19
Identities = 181/260 (70%), Gaps = 10/260 (4%)
Strand=Plus/Minus
Query 123649 TCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG---ACCCATTGCGTCACCA 123703
|||||||||||| || ||||| || | || | || | || | | |||| ||
Sbjct 8343 TCCTTGTGCTTCTGGCCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGG-----CA 8289
Query 123704 GGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCA 123763
|| || || |||||||| |||||||| || || || | ||| ||| ||| | |||
Sbjct 8288 GGGGTAGAAACTGCTGCGGTTAAGAAATTACAACCTTCCAAATAGGAACTTGCCAATCCA 8229
Query 123764 TGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATAC 123823
|| |||||||| || || || || || || ||| |||||||| || | | | |||
Sbjct 8228 TGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCCCCTAAAGCGAAATAA 8169
Query 123824 GCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAAC 123883
|||||||| | || || || ||||||||||||| || || ||||| || || ||||
Sbjct 8168 GCACAAGGAAAGAGCAATAGGCCAGACCATCCTACAAAAACGAAACGGTCCCTTCGTAAC 8109
Query 123884 CAGTCGTCAAGAACATCAAA 123903
||||| || | | ||||||
Sbjct 8108 CAGTCATCCATAGTATCAAA 8089
>seq213450
Length=3525
Score = 147 bits (162), Expect = 2e-30
Identities = 216/305 (71%), Gaps = 7/305 (2%)
Strand=Plus/Minus
Query 124310 CGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTA 124369
|| ||||| ||||| || || || || || || || || ||||| ||||| || || ||
Sbjct 3520 CGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTG 3461
Query 124370 TAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGA 124429
||||| | || || || | || || ||||| ||||| | | || || |
Sbjct 3460 TAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCAAAC------TACCATG- 3408
Query 124430 GAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGG 124489
||||||||||| || ||||| || || |||| | || ||||| ||| ||||||
Sbjct 3407 GAACCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACATGTGA 3348
Query 124490 AAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCT 124549
|| ||||||| | ||||| ||||||| || || || | ||||||||||||||||||
Sbjct 3347 AATAGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGTACCA 3288
Query 124550 GAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAAT 124609
||||| || | |||||||||||||| || || ||||||| || || | |||||
Sbjct 3287 GAGATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCAAGAAA 3228
Query 124610 ACAGC 124614
|||||
Sbjct 3227 ACAGC 3223
>seq36335
Length=20465
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 124473 CTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACA 124532
|||| ||| ||||||||| |||||||| || ||||| |||||||| ||||| || | ||
Sbjct 3395 CTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCA 3454
Query 124533 TAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAA 124592
|||||||||||||||| ||||| || | ||||||||||||| || || |||||||
Sbjct 3455 TAAAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAA 3514
Query 124593 ATGGGTATACTAAGAA 124608
||||| | |||||
Sbjct 3515 TAGGGTAAATCAAGAA 3530
>seq761979
Length=10221
Score = 104 bits (114), Expect = 3e-17
Identities = 167/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 124635 CTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTC 124694
|| |||| |||||| || |||||| |||| || | | | | |||||| ||| |
Sbjct 208 CTCAATATGCAACAACAATTCAAGGATGCATACCCAGACGGAAACTAAGTTCCTACTCAC 267
Query 124695 TTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCAC 124754
||||| || | | ||||| | |||||| |||| | | || |||||||||||
Sbjct 268 AACCCATATAACAAGCTACACCAAGTAAGAAGTGTAAAAAAATTAGCTCATAAGGACCAC 327
Query 124755 CATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGA 124814
|||| || ||||| |||||||| | ||| ||| || |||||||| ||||| | | ||
Sbjct 328 CATTGTATAACCACTCATCAACCGATGCAACTTTTCAAATTGGGTAAAAGTGCAATTTGA 387
Query 124815 TAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAAC 124874
| | | || | |||| || ||||||||||| || ||||| |||| | |||||||
Sbjct 388 TCACCGTCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTTCATAAAGTAAAGAAC 447
>seq856698
Length=257
Score = 93.3 bits (102), Expect = 5e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099
||| ||| |||| |||||| ||||||||||| ||||| | ||||||||| |||||||||
Sbjct 151 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATA 92
Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159
|| | ||| || | ||| | | |||| |||| || | | || | | ||||
Sbjct 91 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCA 32
Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATT 124188
|| || |||||||| || |||||||||||
Sbjct 31 ACTACAGATTGGTTGAAATTGAAACCATT 3
>seq1743757
Length=8691
Score = 86.0 bits (94), Expect = 7e-12
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
||||||||||| || | ||||||||| || || ||||| |||||||| |||||||| ||
Sbjct 2005 ACACCAATAGGGCCCATGCCAGGACCACCTCCACCATGGGGAATACAAAATGTCTTGTGA 2064
Query 138243 AAATTTAGATGACATACATCTGCACCA 138269
| || ||||| || |||||||| |||
Sbjct 2065 AGGTTAAGATGGCAAACATCTGCTCCA 2091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565837621618400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |