Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq45179 259 5e-64 seq57095 246 3e-60 seq213450 147 2e-30 seq36335 120 3e-22 seq761979 104 3e-17 seq856698 93.3 5e-14 seq1743757 86.0 7e-12 >seq45179 Length=9647 Score = 259 bits (286), Expect = 5e-64 Identities = 520/775 (67%), Gaps = 21/775 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || ||| ||||| || || Sbjct 8885 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 8944 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | |||||| || || || ||||| Sbjct 8945 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 9004 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || |||||||| || || | Sbjct 9005 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCACG 9064 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | ||| || || | || || | || |||| |||| | ||| |||| || || Sbjct 9065 TAAGTTCAGAGCCAAGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTAC 9124 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| ||||| | | ||| || ||||| || | |||||| || || || Sbjct 9125 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 9184 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 9185 CCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 9244 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | | ||| ||| ||| ||| | | || Sbjct 9245 ACGGAAGGT---------ATTTGCACCATCA------------CCGTCCTCAAATAGAGT 9283 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | || ||||| |||||||| || ||||| | || | |||| || ||| ||||| Sbjct 9284 GTTTTCTACGGTTGCTCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAAC 9343 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| ||||| || || || || ||||| | ||| | ||| | Sbjct 9344 TCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAA 9403 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| || || || || || |||||||||| || || ||||| Sbjct 9404 TCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCAGATTGCCCCAGTGG 9463 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || || | | || || || || | ||||||||| || ||| || || Sbjct 9464 ATAAATAAGGAATACAGAAACAAAAACAGCAATTGGACCAGAGAATGAGATTGCATTATA 9523 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | | ||| | || | |||||||| | | |||||||||||| ||| | Sbjct 9524 AGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGC 9583 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGA 123640 ||| | || || | |||||||| |||||||||| || | ||| |||||||| Sbjct 9584 AAAAGCCCCGTGGAGAGCTACAAAAGTCCATAGACCGCCTAATTGACACCAACGA 9638 >seq57095 Length=8353 Score = 246 bits (272), Expect = 3e-60 Identities = 337/468 (72%), Gaps = 2/468 (0%) Strand=Plus/Plus Query 124531 CATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACC 124590 |||||||||||||||||| ||||| || | |||||||||||||| || || ||||| Sbjct 5 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACC 64 Query 124591 AAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACA 124650 || ||||| | ||||| ||||| ||||| | || || |||||||| |||||| Sbjct 65 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGC 124 Query 124651 GATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGA 124710 |||||||| ||||| || | | | | |||||||||| | ||||| || | Sbjct 125 AATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGC 184 Query 124711 AATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTC 124770 | ||||| | |||||| | || | | || ||||||||||||||| || ||||| || Sbjct 185 TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTC 244 Query 124771 ATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGG 124830 |||||||| ||| |||||||| |||||||| ||||| | |||||| || || | || Sbjct 245 ATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGG 304 Query 124831 AACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCT 124890 || || ||||||||||| || ||||| ||||| | |||||||| | || || || | Sbjct 305 AATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACG 364 Query 124891 GATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTGCTG 124949 || || || ||||| || ||||| || || || || || | || || ||| | | || Sbjct 365 AATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAGTTG 423 Query 124950 CTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAA 124997 | || | |||| || ||||| | |||||| ||||| || | |||| Sbjct 424 CGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAA 471 Score = 109 bits (120), Expect = 6e-19 Identities = 181/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 123649 TCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG---ACCCATTGCGTCACCA 123703 |||||||||||| || ||||| || | || | || | || | | |||| || Sbjct 8343 TCCTTGTGCTTCTGGCCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGG-----CA 8289 Query 123704 GGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCA 123763 || || || |||||||| |||||||| || || || | ||| ||| ||| | ||| Sbjct 8288 GGGGTAGAAACTGCTGCGGTTAAGAAATTACAACCTTCCAAATAGGAACTTGCCAATCCA 8229 Query 123764 TGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATAC 123823 || |||||||| || || || || || || ||| |||||||| || | | | ||| Sbjct 8228 TGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCCCCTAAAGCGAAATAA 8169 Query 123824 GCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAAC 123883 |||||||| | || || || ||||||||||||| || || ||||| || || |||| Sbjct 8168 GCACAAGGAAAGAGCAATAGGCCAGACCATCCTACAAAAACGAAACGGTCCCTTCGTAAC 8109 Query 123884 CAGTCGTCAAGAACATCAAA 123903 ||||| || | | |||||| Sbjct 8108 CAGTCATCCATAGTATCAAA 8089 >seq213450 Length=3525 Score = 147 bits (162), Expect = 2e-30 Identities = 216/305 (71%), Gaps = 7/305 (2%) Strand=Plus/Minus Query 124310 CGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTA 124369 || ||||| ||||| || || || || || || || || ||||| ||||| || || || Sbjct 3520 CGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTG 3461 Query 124370 TAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGA 124429 ||||| | || || || | || || ||||| ||||| | | || || | Sbjct 3460 TAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCAAAC------TACCATG- 3408 Query 124430 GAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGG 124489 ||||||||||| || ||||| || || |||| | || ||||| ||| |||||| Sbjct 3407 GAACCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACATGTGA 3348 Query 124490 AAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCT 124549 || ||||||| | ||||| ||||||| || || || | |||||||||||||||||| Sbjct 3347 AATAGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGTACCA 3288 Query 124550 GAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAAT 124609 ||||| || | |||||||||||||| || || ||||||| || || | ||||| Sbjct 3287 GAGATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCAAGAAA 3228 Query 124610 ACAGC 124614 ||||| Sbjct 3227 ACAGC 3223 >seq36335 Length=20465 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 124473 CTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACA 124532 |||| ||| ||||||||| |||||||| || ||||| |||||||| ||||| || | || Sbjct 3395 CTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCA 3454 Query 124533 TAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAA 124592 |||||||||||||||| ||||| || | ||||||||||||| || || ||||||| Sbjct 3455 TAAAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAA 3514 Query 124593 ATGGGTATACTAAGAA 124608 ||||| | ||||| Sbjct 3515 TAGGGTAAATCAAGAA 3530 >seq761979 Length=10221 Score = 104 bits (114), Expect = 3e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 124635 CTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTC 124694 || |||| |||||| || |||||| |||| || | | | | |||||| ||| | Sbjct 208 CTCAATATGCAACAACAATTCAAGGATGCATACCCAGACGGAAACTAAGTTCCTACTCAC 267 Query 124695 TTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCAC 124754 ||||| || | | ||||| | |||||| |||| | | || ||||||||||| Sbjct 268 AACCCATATAACAAGCTACACCAAGTAAGAAGTGTAAAAAAATTAGCTCATAAGGACCAC 327 Query 124755 CATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGA 124814 |||| || ||||| |||||||| | ||| ||| || |||||||| ||||| | | || Sbjct 328 CATTGTATAACCACTCATCAACCGATGCAACTTTTCAAATTGGGTAAAAGTGCAATTTGA 387 Query 124815 TAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAAC 124874 | | | || | |||| || ||||||||||| || ||||| |||| | ||||||| Sbjct 388 TCACCGTCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTTCATAAAGTAAAGAAC 447 >seq856698 Length=257 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| ||| |||| |||||| ||||||||||| ||||| | ||||||||| ||||||||| Sbjct 151 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATA 92 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || | ||| || | ||| | | |||| |||| || | | || | | |||| Sbjct 91 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCA 32 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATT 124188 || || |||||||| || ||||||||||| Sbjct 31 ACTACAGATTGGTTGAAATTGAAACCATT 3 >seq1743757 Length=8691 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | ||||||||| || || ||||| |||||||| |||||||| || Sbjct 2005 ACACCAATAGGGCCCATGCCAGGACCACCTCCACCATGGGGAATACAAAATGTCTTGTGA 2064 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || ||||| || |||||||| ||| Sbjct 2065 AGGTTAAGATGGCAAACATCTGCTCCA 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565837621618400