Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq45179 412 4e-110 seq57095 282 5e-71 seq213450 158 2e-33 seq155648 154 2e-32 seq36335 113 6e-20 seq761979 104 3e-17 seq788035 96.9 5e-15 seq79754 95.1 2e-14 seq159272 93.3 5e-14 seq769592 84.2 3e-11 >seq45179 Length=9647 Score = 412 bits (456), Expect = 4e-110 Identities = 543/749 (72%), Gaps = 8/749 (1%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | ||| || | |||||| | || | || ||||| || | Sbjct 8884 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGA---TTTTCATGAG 8940 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || |||||| |||| | || | ||| || | ||||||||| |||| Sbjct 8941 GCTGATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGT 9000 Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 |||| |||||| | | |||||| || ||||| || || || ||||| ||||| | Sbjct 9001 AGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGG 9060 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 |||| | || ||||| | |||| | |||||||| | | ||| | ||| |||| | Sbjct 9061 CACGTAAGTTCAGAGCCAAGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGG 9120 Query 23623 GAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTT 23682 | ||||| | ||||||||| || |||||||| |||||| ||| ||||| || ||||||| Sbjct 9121 GTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTT 9180 Query 23683 GTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGA 23742 | |||||||| || || || || ||||| ||||| || || || | ||||| | | | Sbjct 9181 GGGACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAA 9240 Query 23743 ACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTC 23802 | || || || ||||| || || || ||| | || || || || || || ||| Sbjct 9241 AAGCACGGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCTACGGTTGCTC 9300 Query 23803 CATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGG 23862 |||||||||| | || || || | || | || || ||||||||||||||||| || | Sbjct 9301 CATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATG 9360 Query 23863 GGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAA 23922 |||| | |||||| |||||||| || |||| ||| || | ||| | || ||||| || | Sbjct 9361 GGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATCGCTGCTA 9420 Query 23923 CACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAG 23982 | || ||||||||||||||||||||| || || |||| ||||| || |||||||||| Sbjct 9421 CGCCAAAACTCGGCGCAAAGAACCAACCAGATTGCCCCAGTGGATAAATAAGGAATACAG 9480 Query 23983 ACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTA 24042 | || || |||||||| |||||||| || | || ||||| || || || | | || | Sbjct 9481 AAACAAAAACAGCAATTGGACCAGAGAATGAGATTGCATTATAAGGCCGCAATTGAA-CA 9539 Query 24043 GA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGA 24101 || || || |||||||| || |||||||| |||||||| |||||||| || ||||||||| Sbjct 9540 GACCGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGCAAAAGCCCCGTGGAGA 9599 Query 24102 GCAACAAAGGACCAAAGCCCTCCAAGTTG 24130 || ||||| | ||| || || || | ||| Sbjct 9600 GCTACAAAAGTCCATAGACCGCCTAATTG 9628 >seq57095 Length=8353 Score = 282 bits (312), Expect = 5e-71 Identities = 355/485 (73%), Gaps = 2/485 (0%) Strand=Plus/Plus Query 27212 CAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTT 27271 ||| ||| |||| |||||||||||||| || | ||||||| |||| || || |||| Sbjct 1 CAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTT 60 Query 27272 GACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTA 27331 |||| | ||| || | | ||| || ||| | ||||| || || ||||| |||||||| | Sbjct 61 GACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAA 120 Query 27332 CACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAG 27391 || ||||| || |||||||| | ||| | |||||||||||||| ||||||||| Sbjct 121 CAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAAC 180 Query 27392 CATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACC 27451 | | || | | |||||| | || | || | |||||||||| || || |||| Sbjct 181 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACC 240 Query 27452 ACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAAC 27511 ||||||| | ||||| |||||||| |||||||| ||||| | ||||| || ||| Sbjct 241 ACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAG 300 Query 27512 TTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTT 27571 | || | || |||||||| || || ||||| ||||| | | ||||||| ||| || | Sbjct 301 TAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCT 360 Query 27572 CACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACA 27630 |||||||||| |||||||| || || || || |||||||| |||| ||| || |||| | Sbjct 361 CACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-A 419 Query 27631 GTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTG 27690 ||||| | || | || |||||||||| ||||||||||| || | || | ||| || Sbjct 420 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTT 479 Query 27691 TTAGT 27695 | ||| Sbjct 480 TCAGT 484 >seq213450 Length=3525 Score = 158 bits (174), Expect = 2e-33 Identities = 206/285 (72%), Gaps = 9/285 (3%) Strand=Plus/Minus Query 26992 AAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAAC 27051 || || || || || ||||| || || || || || || |||||||| |||||||| || Sbjct 3523 AATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAAT 3464 Query 27052 TTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGA-CGAGTGAAGATGTAAC 27110 || ||||| | || || ||| ||||||| || || | || | | | ||| ||| Sbjct 3463 TTGTAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCAAACTACCATGGAAC 3404 Query 27111 CAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCAT 27170 || ||||||||| ||| || || || ||||||| ||||| ||||| | ||| Sbjct 3403 CA--------TGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACAT 3352 Query 27171 GTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGT 27230 ||| || | ||||||| ||| ||||| |||| ||| ||||||| ||| |||| ||||| Sbjct 3351 GTGAAATAGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGT 3292 Query 27231 ACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACC 27275 ||||||||| || | ||||||| |||| || || |||||||| Sbjct 3291 ACCAGAGATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACC 3247 >seq155648 Length=2022 Score = 154 bits (170), Expect = 2e-32 Identities = 219/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 23700 GCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTT 23759 || || ||||| ||||| || || || | ||||| | | || || || || ||| Sbjct 1715 GCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGGAAGGTATTT 1774 Query 23760 GCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGA 23819 || || || || ||| | || || || || || || ||||||||||||| | | Sbjct 1775 GCACCATCACCGTCCTCAAATAGAGTGTTTTCTACGGTTGCTCCATGAATAGCGCATGGC 1834 Query 23820 AGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTA 23879 || | | || | || || ||||||||||||||||| || ||||| | |||||| ||| Sbjct 1835 AGAGTCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTA 1894 Query 23880 TGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCA 23939 ||||| || |||| ||| || | ||| | || |||| || || || |||||||||||| Sbjct 1895 TGAAATCCTTGGAAGAAAAGGATGAATCGCAATATCGTTGCCACGCCAAAACTCGGCGCA 1954 Query 23940 AAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATA 23999 ||||||||| || || ||| ||||| || |||||||| | || || | |||||| Sbjct 1955 AAGAACCAACCAGATTGCCCCGGTGGATAAATAAGGAATACGTAAACAAAAATAGCAATT 2014 Query 24000 GGACCAGA 24007 |||||||| Sbjct 2015 GGACCAGA 2022 >seq36335 Length=20465 Score = 113 bits (124), Expect = 6e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27160 ACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATG 27219 ||||| | ||||||||| || ||||||||||| ||||| |||||||||||||||| ||| Sbjct 3397 ACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATA 3456 Query 27220 TAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAA 27279 |||| |||||||| ||||| || | | ||||| |||| || || |||||||| | | Sbjct 3457 AAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAATA 3516 Query 27280 GGATA 27284 || || Sbjct 3517 GGGTA 3521 >seq761979 Length=10221 Score = 104 bits (114), Expect = 3e-17 Identities = 183/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 27323 AATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTC 27382 ||||||| ||| || || ||| ||||||| | ||| | |||||| |||||| | Sbjct 211 AATATGCAACAACAATTCAAGGATGCATACCCAGACGGAAACTAAGTTCCTACTCACAAC 270 Query 27383 CCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGT 27442 |||||||| | | || | | |||||| || | | || | |||||||||| | Sbjct 271 CCATATAACAAGCTACACCAAGTAAGAAGTGTAAAAAAATTAGCTCATAAGGACCACCAT 330 Query 27443 TATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTG 27502 | || ||||||||||| | ||||| ||| || |||||||| ||||| | ||| Sbjct 331 TGTATAACCACTCATCAACCGATGCAACTTTTCAAATTGGGTAAAAGTGCAATTTGATCA 390 Query 27503 CATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAG 27562 | | ||| | || | || |||||||| || || ||||| |||| | | |||| || Sbjct 391 CCGTCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTTCATAAAGTAAAGAACTAG 450 Query 27563 CAACGGGTTCACGAATACCGTCAATAT 27589 ||| ||||| ||||| | ||||||| Sbjct 451 AAACATGTTCATGAATATCATCAATAT 477 >seq788035 Length=1366 Score = 96.9 bits (106), Expect = 5e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26935 GCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAA 26994 ||||| | ||||||||| || ||||| |||||||| || ||||||||||||||| || Sbjct 1082 GCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTAAT 1023 Query 26995 CGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTA 27054 | || | || |||| || || || ||||| || || ||||| |||||||| || || Sbjct 1022 TGGCCAATATAACCATTAGCAGCCACAATGTTATAAGTTTCTTCCTCTTGACCAAATTTG 963 Query 27055 TAACCA 27060 |||||| Sbjct 962 TAACCA 957 >seq79754 Length=5746 Score = 95.1 bits (104), Expect = 2e-14 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 23578 CAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAA 23637 |||||| | | | | |||||| | | ||| | ||| |||| | ||||| | ||||| Sbjct 4975 CAAGCCAACT-ACGTCAATAGCACTCATCCATAAACCAGTGACGAGTACAAATAGCATAA 4917 Query 23638 AGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGAT 23697 |||| || ||||||| |||||| ||| ||||| | |||||||| ||||||||||| | Sbjct 4916 AGAAATGTAACCAACATTTATTGGAAAAAGCAACATCAAAGATTTGGGACCAAAAACGGT 4857 Query 23698 TTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGT 23734 | || || ||||| ||||| || || || | ||||| Sbjct 4856 TAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGT 4820 >seq159272 Length=944 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 23842 CAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAA 23901 ||| |||||||||||| || ||||| | ||||| |||||||| || |||| ||| || | Sbjct 138 CAAATCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAATCCTTGGAAGAAAAGGA 197 Query 23902 GGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCA 23961 ||| | || ||||| || | || ||||| | |||| ||||||| || || || | Sbjct 198 TGAATCGAAATATCGCTGCTATGCCAAAACTAGATGCAATGAACCAACCAGATTGCCCAA 257 Query 23962 AAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGA 24007 || || || ||||||||| | || || | |||| || ||||| Sbjct 258 GTGGGTAAATAAGGAATACAAAAACAAAAGGAACAATTGGGCCAGA 303 >seq769592 Length=4310 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 23908 TGAAA-ATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGA 23966 ||||| |||||||| || || ||||||||||||||||||||| || || |||| ||| Sbjct 1459 TGAAATATCGCCGCTACGCCAAAACTCGGCGCAAAGAACCAACTAGATTGCCCCAGTGGA 1400 Query 23967 TAGATGAGGAATACAGACACGAATACAGCAATAGGACC 24004 || || | ||||| ||| || || |||||||| || || Sbjct 1399 TAAATAAAGAATATAGAAACAAAAACAGCAATTGGGCC 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650367545914400