Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq78186 118 1e-21 seq3887 98.7 1e-15 seq1747981 87.8 2e-12 seq779604 86.0 7e-12 >seq78186 Length=6745 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||| | | || || || || || ||||| ||||||||||| || || || Sbjct 732 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 791 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||||||||| |||||||| ||||| |||||| || || Sbjct 792 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 851 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 852 GCTCATCTCCCGCGACGAGGGCCTGCAC 879 >seq3887 Length=7523 Score = 98.7 bits (108), Expect = 1e-15 Identities = 223/333 (67%), Gaps = 12/333 (4%) Strand=Plus/Plus Query 177585 CTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGC 177644 |||| | || ||||||||||| || |||| || || || || ||||||||||||||||| Sbjct 6195 CTCCTCGGTGGCGACAACATAGTCGTCAGGCTTGTCCTGCTGGAGCATGAGCCACATGGC 6254 Query 177645 TTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAG 177704 || || || ||| ||| ||||| || ||||| ||| |||||| ||||| | Sbjct 6255 CTCGACGTAATCCCCGGCGAAGCCCCAATCCCTGGCGGCGGAGAGGTTGCCGAG---GAA 6311 Query 177705 GAACT--CTCT----CTCACCTTTCACAATTTGTTTGACGCCATCAGTAATCTTCTTTGT 177758 || || ||| | || | || || | || | | || ||||| || Sbjct 6312 GACCTTGGTCTGGAGCCCAACCTT---GATGCGGCCGATGGCGCGGGTGATCTTGCGGGT 6368 Query 177759 GACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATA 177818 ||| |||| |||| || | || || |||||||||||||| | ||| |||||| | Sbjct 6369 GACGAAGTTCTCACCGCGGCGTGGCGACTCGTGGTTGAAGAGCACGCCGTTGCAGGCGAA 6428 Query 177819 CATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCC 177878 || || |||| || ||||| || | | |||||| ||||| | |||| | || | Sbjct 6429 GATGCCGTAGGCCTCGCGGTAGTTGACGGTGTACCAGTGCGCGGCGACCTTGGCGGCGGC 6488 Query 177879 ATAGACGGATCGTGGGTAGAAGGGTGTCTCCTC 177911 ||| ||| || |||| |||||| || |||| Sbjct 6489 GTAGGGGGAGCGCGGGTGGAAGGGCGTGGCCTC 6521 >seq1747981 Length=6417 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/287 (67%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||||||||| |||||| | ||||| |||||||| | | ||| Sbjct 1350 TTTGTGGAGATGTTTGTTGGTGTTGGTGCCTCCCGTGTTCGTGATCTCTTCAAGAAGGCC 1409 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 1410 AAGGAGAATGCTCCTTGCATAGTGTTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGA 1469 Query 175515 ----CAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| | |||||| | || || || || || || || | ||||| || Sbjct 1470 GGAACAGGTATCGGTGGT------GGGAACGATGAAAGGGAGCAGACTCTGAATCAGCTG 1523 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 | || ||||||||||| ||||| | ||||| || | ||| |||| ||||| || Sbjct 1524 TTGACTGAGATGGATGGTTTTGAGGGAAACACTGGTATCATTGTTGTTGCTGCCACCAAC 1583 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 | | || ||| | ||| || | ||| | || || || ||||| Sbjct 1584 AGGGCTGACATCTTGGATTCTGCTTTACTTAGACCTGGACGCTTTGA 1630 >seq779604 Length=6485 Score = 86.0 bits (94), Expect = 7e-12 Identities = 210/317 (66%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| ||| ||| |||| || ||| || || || ||||| || Sbjct 3842 GGGGCCAAGATCCCCAAGGGCTGCCTGCTCGTCGGCCCGCCCGGGACCGGGAAGACACTG 3783 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || ||||| ||| |||| || || | || || ||| || ||| | || | | Sbjct 3782 CTGGCCCGTGCCGTCGCCGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCCGCGTCTGAG 3723 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || || ||||| || ||||| | || ||||| || | ||| Sbjct 3722 TTCGTCGAGCTCTTCGTCGGCGTGGGCGCGTCCAGGGTGAGGGACCTCTTCGAGAAGGCC 3663 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || |||||||| ||||||||||| || || || | ||| || Sbjct 3662 AAGGCCAAGGCGCCCTGCATCGTCTTCATCGATGAGATTGACGCCGTCGGGAGGCAGCGT 3603 Query 175516 AGCGCTGGT---GGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | || ||| ||| | | || || ||||| || || || || || || || ||| Sbjct 3602 GGTGCCGGTATGGGTGGG---GGGAACGATGAGAGGGAGCAGACCATCAACCAGCTGCTC 3546 Query 175573 ACCGAGATGGATGGCTT 175589 || |||||||| ||||| Sbjct 3545 ACGGAGATGGACGGCTT 3529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583009423849600