Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq57095 237 2e-57 seq213450 192 7e-44 seq36335 109 7e-19 seq761979 100 3e-16 seq788035 98.7 1e-15 seq856698 93.3 5e-14 seq837997 87.8 2e-12 seq703676 84.2 3e-11 >seq57095 Length=8353 Score = 237 bits (262), Expect = 2e-57 Identities = 353/501 (70%), Gaps = 0/501 (0%) Strand=Plus/Plus Query 8373 CATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACC 8432 ||| ||||| || |||||||| || |||| |||||| |||||||| || || ||||| Sbjct 5 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACC 64 Query 8433 AAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACA 8492 || || || | ||||| || || |||||| | || ||||| |||||| ||| Sbjct 65 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGC 124 Query 8493 GATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGA 8552 ||||| || | |||||| | ||| | | ||||||| | |||||| ||| || Sbjct 125 AATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGC 184 Query 8553 AATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTC 8612 | |||| | |||||| | | || | || ||| ||||| || || || |||||||| Sbjct 185 TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTC 244 Query 8613 ATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGG 8672 ||| | | |||||||||||||| || || ||||| ||||| || || |||| || Sbjct 245 ATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGG 304 Query 8673 AACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACG 8732 || | |||||||||||| || ||||||||||| | || ||||| | |||||| ||||| Sbjct 305 AATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACG 364 Query 8733 AATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGC 8792 |||||| || ||||| || || || ||||| || || || | ||||| || || || Sbjct 365 AATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGC 424 Query 8793 AGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGT 8852 | || ||| ||| ||||| | ||| || ||||| |||| ||||| | || | || Sbjct 425 GGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGT 484 Query 8853 ACTTGTAACCCACTCGCAAAA 8873 || || | ||| | ||| || Sbjct 485 GCTAGTTATCCAGTTGCAGAA 505 >seq213450 Length=3525 Score = 192 bits (212), Expect = 7e-44 Identities = 228/310 (74%), Gaps = 7/310 (2%) Strand=Plus/Minus Query 8147 TTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAA 8206 |||||| ||||| || ||||||||||| ||||||||||| |||||||| |||||||||| Sbjct 3525 TTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAA 3466 Query 8207 ACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAA 8266 | || ||||| | || || || | |||||| || || ||||| | | | Sbjct 3465 ATTTGTAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCAAA-------CTA 3413 Query 8267 CTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCA 8326 | | ||||| ||||||||| |||| || || || |||| | ||| ||||| ||| || Sbjct 3412 CCATGGAACCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACA 3353 Query 8327 TATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACG 8386 | || || ||||||||| ||||| ||||||| || ||||| | ||| ||||| || | Sbjct 3352 TGTGAAATAGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAG 3293 Query 8387 TACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTA 8446 ||||||| || |||| |||||| |||||||| || || ||||||| || || | | Sbjct 3292 TACCAGAGATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCA 3233 Query 8447 AGAACACTGC 8456 |||| || || Sbjct 3232 AGAAAACAGC 3223 >seq36335 Length=20465 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 8315 CTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACA 8374 |||| ||| ||| ||||| ||||||||||| ||||| |||||||| |||||||| | || Sbjct 3395 CTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCA 3454 Query 8375 TGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAA 8434 | ||||| || ||||| || || |||| | |||| |||||||| || || ||||||| Sbjct 3455 TAAAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAA 3514 Query 8435 ATGGATATACTAAGAACA 8452 || || | ||||||| Sbjct 3515 TAGGGTAAATCAAGAACA 3532 >seq761979 Length=10221 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 8527 TCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGA 8586 ||| ||| | |||||| ||| || | |||| | |||||| || | || | || | Sbjct 258 TCCTACTCACAACCCATATAACAAGCTACACCAAGTAAGAAGTGTAAAAAAATTAGCTCA 317 Query 8587 TATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAG 8646 || ||||| || || || ||||||||||| | | ||| ||| ||||| || || ||| Sbjct 318 TAAGGACCACCATTGTATAACCACTCATCAACCGATGCAACTTTTCAAATTGGGTAAAAG 377 Query 8647 TGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATAC 8706 || ||| || | | |||| |||| | |||||||||||| || |||||| |||| Sbjct 378 TGCAATTTGATCACCGTCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTTCATAA 437 Query 8707 ATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATAT 8746 | || |||| | |||| ||||| ||||| | || |||| Sbjct 438 AGTAAAGAACTAGAAACATGTTCATGAATATCATCAATAT 477 >seq788035 Length=1366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 8084 CTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAACGATGCATACTGGA 8143 ||| ||| | ||| | ||||||||| | | | | ||||||||| ||||| |||| Sbjct 1090 CTGAGAAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGA 1031 Query 8144 AGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGAC 8203 |||||||| |||| || |||| |||||| ||||| ||||| || ||||| ||||||| Sbjct 1030 AGATTAATTGGCCAATATAACCATTAGCAGCCACAATGTTATAAGTTTCTTCCTCTTGAC 971 Query 8204 CAAACTTATAACCA 8217 |||| || |||||| Sbjct 970 CAAATTTGTAACCA 957 >seq856698 Length=257 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 7882 TCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 7941 ||| ||| |||||||||| ||||||||||| ||||| | ||||||||| ||||||||| Sbjct 151 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATA 92 Query 7942 CCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCA 8001 || | ||| || | ||| | | ||| |||| ||| ||| | ||| | | |||| Sbjct 91 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCA 32 Query 8002 ACAACTGATTGGTTAAAGTTAAATCCGTT 8030 || || |||||||| || || || || || Sbjct 31 ACTACAGATTGGTTGAAATTGAAACCATT 3 >seq837997 Length=1373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 8155 CCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAA 8214 ||||| || ||||||||||| ||||||||||| |||||||| ||||||||||| || ||| Sbjct 105 CCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAA 46 Query 8215 CCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGAT 8252 || | || || || | |||||| || || ||||| Sbjct 45 CCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGAT 8 >seq703676 Length=206 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 |||||||| ||||||||||| || ||||| | || || || | |||||| || || Sbjct 3 GTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCC 62 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 ||||| | | ||| || || || ||||| |||||||||||||| || || | ||||| Sbjct 63 CTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAATCGCCGAAT 122 Query 8308 ATACCT 8313 | |||| Sbjct 123 ACACCT 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601863693682400