Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq57095 224 3e-54 seq213450 165 2e-36 seq788035 111 5e-20 seq36335 102 2e-17 seq856698 91.5 4e-14 seq837997 89.7 1e-13 >seq57095 Length=8353 Score = 224 bits (248), Expect = 3e-54 Identities = 337/476 (71%), Gaps = 2/476 (0%) Strand=Plus/Minus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | || |||||||| | ||||||||||| || | ||||| || | ||| ||| | Sbjct 484 ACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGAC 426 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 ||| || || |||||||||||||| | | || || || || || || ||||| || Sbjct 425 CGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 366 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 || || || || |||| || | | ||||| ||||| || || || || || | | Sbjct 365 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTAT 306 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | | || |||||| | ||||| |||||||||||||||||||| | |||| Sbjct 305 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 246 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||| ||| | ||||| || ||||| | | || | || | |||||| | |||| || Sbjct 245 TGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 186 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | ||| ||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 185 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT 126 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673 |||||| || || |||||||| || ||||| |||||||| ||| | |||| || | Sbjct 125 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTAT 66 Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACT 41729 ||| || || |||||||||| |||||| || || || || || || ||||||| Sbjct 65 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACT 10 >seq213450 Length=3525 Score = 165 bits (182), Expect = 2e-36 Identities = 221/308 (72%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 41648 ACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTG 41707 |||||||| ||| | |||| || |||| || || |||||||||| |||||| || Sbjct 3220 ACTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTA 3279 Query 41708 GGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATG 41767 || || || || || ||||||| ||| | || || ||| | |||||||| || ||||| Sbjct 3280 GGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATG 3339 Query 41768 CATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATG 41827 |||| ||||||||| | ||||| || || ||||| | || | ||| ||||||| Sbjct 3340 CATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATG 3399 Query 41828 CACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAAC 41887 || ||| | |||| | ||| | || || |||||| | | || || Sbjct 3400 CATGGTTCCATGGTAGTTTGATCA-------GGGAAACTACTGAAAATGAATCCGCTAAT 3452 Query 41888 TATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTAT 41947 | |||||||| ||||||||||||||||||||||| |||||||| |||||||| || ||| Sbjct 3453 GAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTAT 3512 Query 41948 TTTGGTCG 41955 ||||| || Sbjct 3513 TTTGGCCG 3520 >seq788035 Length=1366 Score = 111 bits (122), Expect = 5e-20 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 41890 TGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTT 41949 ||||||||| ||||||||||||||||| ||||| || ||||| |||||| | || ||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 41950 TGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCT 42009 ||| | | ||||||||||||||||| ||||| || || ||| | | || ||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 42010 TGCTGC 42015 ||||| Sbjct 1077 GGCTGC 1082 >seq36335 Length=20465 Score = 102 bits (112), Expect = 2e-17 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 41652 CTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGA 41711 || ||||| | |||| || |||| || || |||||||||| ||||| || || | Sbjct 3535 CTTTGTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAA 3476 Query 41712 TATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATC 41771 | ||||| || ||||||| ||| | || |||||||| |||||||| || |||||||||| Sbjct 3475 TCTCCGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 3416 Query 41772 CTTTTCACATGCTGGGTGT 41790 | || |||||| | ||||| Sbjct 3415 CATTCCACATGTTAGGTGT 3397 >seq856698 Length=257 Score = 91.5 bits (100), Expect = 4e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 42077 AATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGG 42136 ||||||||||| || ||||||||| | | | | | | || | || || || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 42137 GCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACAC 42196 ||||| || | |||||||| |||||||| | || || |||||||| || || || ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 42197 AACTTCCCGCTTGAC 42211 |||||||| || ||| Sbjct 123 AACTTCCCTCTAGAC 137 >seq837997 Length=1373 Score = 89.7 bits (98), Expect = 1e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 |||||||| ||||||||||||||||||||||| |||||||| |||||||| || |||||| Sbjct 44 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 103 Query 41951 GG 41952 || Sbjct 104 GG 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143057084627680