Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq57095 237 4e-58 seq213450 150 5e-32 seq36335 100 8e-17 seq788035 96.9 1e-15 seq856698 93.3 1e-14 seq837997 86.0 2e-12 >seq57095 Length=8353 Score = 237 bits (262), Expect = 4e-58 Identities = 363/512 (71%), Gaps = 4/512 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| ||| | || |||||||| | || ||||| Sbjct 514 TGGGGTCGCTTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTC 455 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| |||| |||| Sbjct 454 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCA 397 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | || | Sbjct 396 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTT 337 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || ||||||||||| | | |||| | || || ||| | || | Sbjct 336 ATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACT 277 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | |||| || ||| | |||||||| || |||||| Sbjct 276 TTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATG 217 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | ||| |||| || || ||||||| Sbjct 216 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 157 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 156 TTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 97 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || ||||| || ||| | | || || |||| ||||| ||||| ||||| |||| Sbjct 96 CTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGC 37 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATG 42789 || | || || || ||||| |||||||| ||| Sbjct 36 CTTTAGGAATCTCTGGTACTTTCAACTTTATG 5 >seq213450 Length=3525 Score = 150 bits (166), Expect = 5e-32 Identities = 220/309 (71%), Gaps = 9/309 (3%) Strand=Plus/Plus Query 42703 ACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTT 42762 ||||| || ||| | | || || |||| ||||| ||||| ||||| |||||| | Sbjct 3220 ACTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTA 3279 Query 42763 GGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATG 42822 || || || ||||| |||||||| ||| | || || ||| | || || ||||| ||||| Sbjct 3280 GGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATG 3339 Query 42823 CATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATG 42882 |||| || || ||| | ||||| || || ||||| | || || | ||| |||||| Sbjct 3340 CATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATG 3399 Query 42883 CATGGTAGTCTTGTCACCTCTTCTCTTG-TGCGTGAAACGACTGAAAACGAAAGCCAAAA 42941 |||||| || | | | ||| | | ||||| |||||||| ||| | || Sbjct 3400 CATGGT--TC------CATGGTAGTTTGATCAGGGAAACTACTGAAAATGAATCCGCTAA 3451 Query 42942 TTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTA 43001 | | || ||||| || ||||||||||| ||||||||||| ||||| || || |||||||| Sbjct 3452 TGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTA 3511 Query 43002 CTTTGGACG 43010 ||||| || Sbjct 3512 TTTTGGCCG 3520 >seq36335 Length=20465 Score = 100 bits (110), Expect = 8e-17 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 42728 TTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCA 42787 |||| ||||| ||||| ||||| |||| | | || || |||||||| |||||||| | Sbjct 3514 TTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTCAACTTTA 3455 Query 42788 TGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGT 42845 || | || |||||||| || || ||||| ||||||||||| ||||| ||| | ||||| Sbjct 3454 TGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGT 3397 >seq788035 Length=1366 Score = 96.9 bits (106), Expect = 1e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 42945 TGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTT 43004 ||| ||||| || ||||||||||| || |||||||||||||| || || ||||||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 43005 TGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCT 43064 ||| | | |||||||||||||| ||||| || ||| ||||| |||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 43065 TGCCGCTT 43072 || |||| Sbjct 1077 GGCTGCTT 1084 >seq856698 Length=257 Score = 93.3 bits (102), Expect = 1e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 43132 AATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGG 43191 |||||||| || || |||||||| | ||||||| ||| || || || ||||||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 43192 GCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACAT 43251 |||||||| | || ||||| |||||||| | || || ||||| || || ||||| || Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 43252 AACTTCCCGCTTGA 43265 |||||||| || || Sbjct 123 AACTTCCCTCTAGA 136 >seq837997 Length=1373 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 42916 GAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACT 42975 ||||| |||||||| ||| | ||| | || ||||| || ||||||||||| |||||| Sbjct 14 GAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 73 Query 42976 TATAACATTGTTGCAGCGCATGGTTACTTTGG 43007 ||||| ||||| || || |||||||| ||||| Sbjct 74 TATAATATTGTGGCTGCTCATGGTTATTTTGG 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140433390394160