Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq57095 260 4e-65 seq213450 138 3e-28 seq856698 98.7 3e-16 >seq57095 Length=8353 Score = 260 bits (288), Expect = 4e-65 Identities = 355/493 (72%), Gaps = 2/493 (0%) Strand=Plus/Plus Query 26359 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCC 26418 ||||||||| |||||||||||||| || | |||||| |||||| ||| || ||||| || Sbjct 5 CATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACC 64 Query 26419 GAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAA 26478 | ||| |||| ||||| || || ||| || | | || |||| |||||||||| Sbjct 65 AATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGC 124 Query 26479 TATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGC 26538 ||||| || | ||| || || | | || |||||||||| | || ||| || Sbjct 125 AATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGC 184 Query 26539 TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTC 26598 ||| || | ||||||||| | | ||| || | ||| || || |||||||||| |||||| Sbjct 185 TACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTC 244 Query 26599 GTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGG 26658 || | | |||||||||| || |||||||| || | |||||| || ||| | || Sbjct 245 ATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGG 304 Query 26659 GACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACG 26718 | | || || || || ||||||||||| || | ||| || || ||||| |||||||| Sbjct 305 AATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACG 364 Query 26719 TATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGG 26777 || ||||| |||||||| || || || ||||||||||| | ||||| ||| | ||| | Sbjct 365 AATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAGTTG 423 Query 26778 CTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAG 26837 | | | |||| || ||||| | || ||||||||||| | || ||||| || |||| Sbjct 424 CGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAG 483 Query 26838 TACTTGTAACCCA 26850 | || || | ||| Sbjct 484 TGCTAGTTATCCA 496 >seq213450 Length=3525 Score = 138 bits (152), Expect = 3e-28 Identities = 217/310 (70%), Gaps = 7/310 (2%) Strand=Plus/Minus Query 26133 TTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAA 26192 |||||| ||||| || || || ||||| ||||||||||| |||||||| ||||| |||| Sbjct 3525 TTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAA 3466 Query 26193 ACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAA 26252 | || || || | ||| || | | || || ||||| || | || || Sbjct 3465 ATTTGTAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCA------AACTA- 3413 Query 26253 CCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCA 26312 ||| || ||||||||| ||| || | || |||| || ||||| ||||| || Sbjct 3412 CCATGGAACCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACA 3353 Query 26313 TATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAG 26372 | || ||| | ||||| | || || || |||| || ||||| | ||||||||| |||| Sbjct 3352 TGTGAAATAGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAG 3293 Query 26373 TACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTA 26432 |||||||||| || | |||||| |||||| ||| | ||||| || | || |||| | Sbjct 3292 TACCAGAGATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCA 3233 Query 26433 AGAACACTGC 26442 |||| || || Sbjct 3232 AGAAAACAGC 3223 >seq856698 Length=257 Score = 98.7 bits (108), Expect = 3e-16 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||||||| || || ||||| ||||||||||| || ||||| ||||| | || |||||| Sbjct 142 GCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 83 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || || ||| ||||| || Sbjct 82 GCACGGTTGATGATATCAGCCCAAGTA-TTAATAACGCGACCTTGACTATCAACTACAGA 24 Query 25996 CTGGTTAAAGTTAAAACCATTTA 26018 ||||| || || |||||||||| Sbjct 23 TTGGTTGAAATTGAAACCATTTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144522345846400