Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq57095 304 1e-77 seq213450 178 1e-39 seq761979 125 8e-24 seq856698 118 1e-21 seq36335 107 2e-18 seq788035 93.3 5e-14 >seq57095 Length=8353 Score = 304 bits (336), Expect = 1e-77 Identities = 370/503 (74%), Gaps = 6/503 (1%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| |||| || || | || |||| |||||||||||| | | Sbjct 504 TCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGA 445 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||||||||| ||||| |||| Sbjct 444 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 385 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || ||||||||||| | ||||| ||||| | Sbjct 384 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATA 325 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | |||||||||||| || | |||| ||| || || || | ||||| || || |||| Sbjct 324 TTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTT 265 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || ||||||||||||| |||||||||||||||| | || | || Sbjct 264 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTC 205 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | |||||| | | || | ||| | | | |||||| ||||||||||| || || Sbjct 204 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 148 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || ||||| |||||||| ||||||||| || || || || | ||||| | Sbjct 147 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 88 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | |||| ||| | |||||||| || ||||||| |||||| | || | Sbjct 87 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAA 28 Query 155447 TCTCTGGTACTTTTAACTATATG 155469 ||||||||||||| |||| |||| Sbjct 27 TCTCTGGTACTTTCAACTTTATG 5 >seq213450 Length=3525 Score = 178 bits (196), Expect = 1e-39 Identities = 223/305 (73%), Gaps = 7/305 (2%) Strand=Plus/Plus Query 155386 GCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGT 155445 ||||| ||| | |||| || | |||||||| || ||||||| |||||| | || Sbjct 3223 GCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGA 3282 Query 155446 ATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505 |||||||||||||| |||| |||| | || || || |||| ||||| ||| ||||||| Sbjct 3283 ATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCAT 3342 Query 155506 CCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCAC 155565 | || |||||| | || ||||| ||||| |||| || || || ||| ||||||||| Sbjct 3343 CTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCAT 3402 Query 155566 GGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTAT 155625 ||||| |||| | | | ||| | ||||||||||| | || || || | Sbjct 3403 GGTTCCATGGT-AGTT------TGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAG 3455 Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 |||||||| || || ||||| ||||| |||||||| ||||| ||||||||||| || || Sbjct 3456 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 3515 Query 155686 GGTCG 155690 || || Sbjct 3516 GGCCG 3520 >seq761979 Length=10221 Score = 125 bits (138), Expect = 8e-24 Identities = 188/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157 ||||||| ||||| ||||| || || |||||||| | |||| ||||| || |||||| Sbjct 475 ATTGATGATATTCATGAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCTCT 416 Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217 |||||| || | |||| ||| | | || | ||||| || || ||||| ||| Sbjct 415 GGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAGTT 356 Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 ||| | ||||||||||||| |||||||||||||||| | || | | || |||||| Sbjct 355 GCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTACACTTC 296 Query 155278 CTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGC 155334 | | || | ||| | | | ||| || ||| ||||||| || |||||| || Sbjct 295 TTACTTGGTGT---AGCTTGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGGGT 239 Query 155335 ATGCGTCCTTGGATCTGTGTTGCATA 155360 |||| |||||| || ||||||||| Sbjct 238 ATGCATCCTTGAATTGTTGTTGCATA 213 >seq856698 Length=257 Score = 118 bits (130), Expect = 1e-21 Identities = 118/152 (78%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 155812 AACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACA 155868 || |||||||| |||||||| |||||||| || |||| ||| || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGCGTTATTAATACT 59 Query 155869 TGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCT 155928 ||||| || || | ||||| ||| |||||||||||||||||||| || ||||| ||| Sbjct 60 TGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCT 119 Query 155929 CACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 |||||||||||||| ||| | ||||||| ||| Sbjct 120 CACAACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq36335 Length=20465 Score = 107 bits (118), Expect = 2e-18 Identities = 105/134 (78%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 155395 CTTG-TTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGG 155453 |||| |||| ||| | |||||||| || ||||||| |||| | | || ||||| || Sbjct 3528 CTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGG 3469 Query 155454 TACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCA 155513 |||||| |||| |||| | || ||||| ||||| ||||| ||||||||||| || ||||| Sbjct 3468 TACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCA 3409 Query 155514 CATGCTTGGAGTAG 155527 |||| | || |||| Sbjct 3408 CATGTTAGGTGTAG 3395 >seq788035 Length=1366 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 155625 TGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTT 155684 ||||||||| || || ||||| |||||||||||||||||||| |||||| |||| || | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 155685 CGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 155744 || | | |||||||| ||||| || |||||||| | | | ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 155745 TGCTGC 155750 ||||| Sbjct 1077 GGCTGC 1082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571541749695200