Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq57095 275 2e-69 seq213450 147 6e-31 seq856698 111 4e-20 seq36335 107 5e-19 >seq57095 Length=8353 Score = 275 bits (304), Expect = 2e-69 Identities = 366/506 (72%), Gaps = 2/506 (0%) Strand=Plus/Plus Query 41011 CAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCT 41070 ||| ||| |||||||| || ||| |||||||||||||||||||||||| || || | Sbjct 1 CAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTT 60 Query 41071 GACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCA 41130 |||| | || |||| ||||| ||||| ||| |||| | ||||||| ||||| | Sbjct 61 GACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAA 120 Query 41131 CAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATG 41190 || ||||| || | |||||| || | | | ||||||||||| | ||| || Sbjct 121 CAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAAC 180 Query 41191 CTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCC 41250 ||||| || | ||| ||||| | ||||| || | ||| || || || ||||||| || Sbjct 181 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACC 240 Query 41251 ACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGC 41310 |||| || | | | |||||||| |||||||| || || | |||||| || ||| Sbjct 241 ACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAG 300 Query 41311 TCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCT 41370 | |||| | ||| ||||| ||||||||||| || || | ||| || || ||||| |||| Sbjct 301 TAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCT 360 Query 41371 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTG 41429 |||| || ||||| |||||||| || || || ||||| |||||||| || || ||| | Sbjct 361 CACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAA 419 Query 41430 GTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTG 41489 || || || | ||| | || ||||| | ||||| ||||| || | ||| || || || Sbjct 420 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTT 479 Query 41490 TCGGTGCTAGTGACCCAGTTACAAAA 41515 || |||||||| | |||||| || || Sbjct 480 TCAGTGCTAGTTATCCAGTTGCAGAA 505 >seq213450 Length=3525 Score = 147 bits (162), Expect = 6e-31 Identities = 219/310 (71%), Gaps = 7/310 (2%) Strand=Plus/Minus Query 40789 TTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAA 40848 ||| || ||||| ||||| || ||||| || || ||||||||||| | || ||||||| Sbjct 3525 TTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAA 3466 Query 40849 ACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAA 40908 | || || || | || |||||| |||| || || |||| || | || || Sbjct 3465 ATTTGTAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCA------AACTAC 3412 Query 40909 CAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCA 40968 || || || ||||||||| || | | ||| | || || || || || || | || Sbjct 3411 CATGGAA-CCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACA 3353 Query 40969 TATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATG 41028 | || ||| | ||||| | |||||||| |||| || || |||| ||| |||||||| | Sbjct 3352 TGTGAAATAGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAG 3293 Query 41029 TTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTA 41088 | ||| |||||||||||||||||||||||| || || ||||| | || |||| | Sbjct 3292 TACCAGAGATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCA 3233 Query 41089 AGAATACAGC 41098 |||| ||||| Sbjct 3232 AGAAAACAGC 3223 >seq856698 Length=257 Score = 111 bits (122), Expect = 4e-20 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||||||||||||| ||||||||||| ||||| || ||||||||||||||| Sbjct 151 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATA 92 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||| | | ||||||||||||| ||| || ||| | | || Sbjct 91 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCA 32 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATT 40672 ||||| || ||||| || || |||||||| Sbjct 31 ACTACAGATTGGTTGAAATTGAAACCATT 3 >seq36335 Length=20465 Score = 107 bits (118), Expect = 5e-19 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40959 ACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATG 41018 || || | ||| |||||||| ||||| || |||||||| ||||| ||||| |||| ||| Sbjct 3397 ACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATA 3456 Query 41019 AAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAAT 41078 |||||||| || || |||||||||| ||||||||||||| || || ||||| | Sbjct 3457 AAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAATA 3516 Query 41079 GGATAAACTAAGAA 41092 || |||| ||||| Sbjct 3517 GGGTAAATCAAGAA 3530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140599328096280