Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq57095 242 4e-59 seq213450 197 2e-45 seq36335 111 2e-19 seq856698 107 2e-18 seq703676 91.5 2e-13 >seq57095 Length=8353 Score = 242 bits (268), Expect = 4e-59 Identities = 340/476 (71%), Gaps = 6/476 (1%) Strand=Plus/Plus Query 67849 AGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAG 67908 |||| ||||||||||| || || | |||||| | ||||| || |||||||| | || Sbjct 10 AGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAG 69 Query 67909 GATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCC 67968 | || | |||||| ||||| || || | || ||||| || ||||| ||| |||| Sbjct 70 GGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCC 129 Query 67969 AAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC---ACAGTATGCTGTGA 68025 |||| |||||||| |||||| || ||||||||||| |||||| | | | ||| | Sbjct 130 AAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT---A 186 Query 68026 TTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCAT 68085 || | | |||||| | || | || | |||| |||||||| || |||||||||| Sbjct 187 CACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCAT 246 Query 68086 CTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAA 68145 | | || ||| |||||||| || || || ||||| | ||||| || ||| |||||| Sbjct 247 CAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAA 306 Query 68146 CAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGA 68205 || ||||||||| || || ||||| || || | | ||||| | |||||| || | | Sbjct 307 TAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAA 366 Query 68206 TACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTG 68265 ||||||| ||||| |||||||| || || ||||| || || || || || | ||| | Sbjct 367 TACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTTGCGG 426 Query 68266 CGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCA 68321 | ||| ||| |||||||| ||||||||||| || | || | ||||| ||| Sbjct 427 TCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCA 482 >seq213450 Length=3525 Score = 197 bits (218), Expect = 2e-45 Identities = 229/308 (74%), Gaps = 7/308 (2%) Strand=Plus/Minus Query 67620 AAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAAC 67679 || || || || || ||||||||||| ||||| || ||||||||||| ||||| || || Sbjct 3523 AATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAAT 3464 Query 67680 TTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACA 67739 |||||||| | || || || | ||||||||||| ||||| | || || || Sbjct 3463 TTGTAACCCTCATTAGCGGATTCATTTTCAGTAGTTTCCCTGATCA------AACTACCA 3410 Query 67740 AGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATA 67799 | ||||| ||||||||| | || || ||||| |||||||||| ||||| || | ||| Sbjct 3409 TG-GAACCATGCATAGCATTGAATAGGGAACCGACGAATACACCAGCTACACCTAACATG 3351 Query 67800 TGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTA 67859 || ||| | ||||||| |||||||||||||| || || || | ||| |||| |||||| Sbjct 3350 TGAAATAGATGCATAAAGATGTTGTGCTCTGACTGAAATACAATCATAAAGTTGAAAGTA 3291 Query 67860 CCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAG 67919 ||||| || || | |||||| | ||||| || |||||||| | || || | |||| Sbjct 3290 CCAGAGATTCCTAAAGGCATACCATCAGAAAAGTTTCCTTGACCAATGGGCTAAATCAAG 3231 Query 67920 AACACAGC 67927 || ||||| Sbjct 3230 AAAACAGC 3223 >seq36335 Length=20465 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 67786 CTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACA 67845 |||| || | ||| |||||||| ||||||||||||||||||||||| ||||| || | || Sbjct 3395 CTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCA 3454 Query 67846 TGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGA 67905 | |||| |||||||| || || || | | |||| | ||||| || |||||||| | Sbjct 3455 TAAAGTTGAAAGTACCGGAGATTCCTAAAAGCATACCATCAGAAAAGCTTCCTTGACCAA 3514 Query 67906 AAGGATAGACCAAGAACACAG 67926 ||| || | |||||||| || Sbjct 3515 TAGGGTAAATCAAGAACAAAG 3535 >seq856698 Length=257 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| | ||| ||||||||||||||||| ||||| || ||||| |||||||| Sbjct 151 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATA 92 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCA 67472 ||||| || | ||| | ||| || ||||||||| ||| || ||| ||| Sbjct 91 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCA 32 Query 67473 ACGACGGATTGGTTGAAGTTGAAACCGTT 67501 || || ||||||||||| |||||||| || Sbjct 31 ACTACAGATTGGTTGAAATTGAAACCATT 3 >seq703676 Length=206 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 67657 AAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTT 67716 |||||||||| ||||| || || |||||||| | || || || | |||||||||| Sbjct 1 AAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCGGATTCATTTTCAGTAGTTT 60 Query 67717 CTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGA 67776 | ||||| | | ||| || || | ||||| ||||||||||| || || ||| | |||| Sbjct 61 CCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAATCGCCGA 120 Query 67777 ATACACCT 67784 |||||||| Sbjct 121 ATACACCT 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554060348407200