Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq752483 104 4e-17 >seq752483 Length=2742 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| || | |||| |||||| ||||| ||||| | ||||| | | Sbjct 1426 CGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCAGCCAACGTACGACCG 1367 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || ||||||||||| || | ||||| || ||||| || || || || ||| Sbjct 1366 TCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTA 1307 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | ||| |||||| || ||| |||||| ||||| ||||| Sbjct 1306 TCCTGGATCTTGGCCTTCACATTATCAATAGTGTCAGAACTCTCAACCTCTAGGGTTATG 1247 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || ||||| Sbjct 1246 GTCTTCCCAGTGAGGGTCTTCACAAAAATCTGCAT 1212 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| ||||| ||||| || || || | || | ||| || ||| || || || Sbjct 1213 ATCCCACCCCTCAACCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCA 1154 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | |||||| || ||||| || | |||||||| || || Sbjct 1153 GCCAAGGTGCGGCCATCTTCCAGTTGTTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGT 1094 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || | || | ||| ||| || || ||| ||| Sbjct 1093 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCAGAACTCTCG 1034 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||||||||| || || || || || ||||| ||||| || ||||| Sbjct 1033 ACCTCTAGAGTTATGGTCTTCCCAGTAAGAGTTTTCACAAAGATCTGCAT 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 879205030574400