Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq752483 102 2e-16 >seq752483 Length=2742 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || |||||| | || || | || | ||| | ||| | ||||| ||| |||||||| Sbjct 1670 AAGACCACCACGGAGGCGCAGGACAAGATGAAGAGTGGATTCTTTTTGGATGTTATAATC 1611 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || || || |||| |||| || || || |||||||| | ||||| ||||| || Sbjct 1610 TGCCAAGGTACGCCCATCCTCCAGCTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCTGG 1551 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || ||||| || || || || || || || |||||| || | || || || Sbjct 1550 AGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATGGTGTCGGAGCTCTC 1491 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || ||||||||||| || | ||| |||||||| Sbjct 1490 CACCTCAAGAGTAATGGTCTTTCCAGTTAATGTCTTGACAAAAATCTGCAT 1440 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||||| || || || |||| |||| |||||| ||||||||||| | ||| Sbjct 1165 ATGTTGTAATCAGCCAAGGTGCGGCCATCTTCCAGTTGTTTCCCAGCAAAGATAAGCCTC 1106 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || ||||| || || || || || || || || || ||||| || | Sbjct 1105 TGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTG 1046 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || |||||||| ||||| || ||||| | ||||| | ||| |||||| Sbjct 1045 TCAGAACTCTCGACCTCTAGAGTTATGGTCTTCCCAGTAAGAGTTTTCACAAAGATCTGC 986 Query 192535 AT 192536 || Sbjct 985 AT 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 961543086567000