Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30]
1,818,420 sequences; 1,425,274,558 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq752483 102 2e-16
>seq752483
Length=2742
Score = 102 bits (112), Expect = 2e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365
|| |||||| | || || | || | ||| | ||| | ||||| ||| ||||||||
Sbjct 1670 AAGACCACCACGGAGGCGCAGGACAAGATGAAGAGTGGATTCTTTTTGGATGTTATAATC 1611
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
| || || || |||| |||| || || || |||||||| | ||||| ||||| ||
Sbjct 1610 TGCCAAGGTACGCCCATCCTCCAGCTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCTGG 1551
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| ||||| || || || || || || || |||||| || | || || ||
Sbjct 1550 AGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATGGTGTCGGAGCTCTC 1491
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || ||||||||||| || ||||||||||| || | ||| ||||||||
Sbjct 1490 CACCTCAAGAGTAATGGTCTTTCCAGTTAATGTCTTGACAAAAATCTGCAT 1440
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || ||||||| || || || |||| |||| |||||| ||||||||||| | |||
Sbjct 1165 ATGTTGTAATCAGCCAAGGTGCGGCCATCTTCCAGTTGTTTCCCAGCAAAGATAAGCCTC 1106
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
||||| || ||||| || || || || || || || || || ||||| || |
Sbjct 1105 TGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTG 1046
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || || || |||||||| ||||| || ||||| | ||||| | ||| ||||||
Sbjct 1045 TCAGAACTCTCGACCTCTAGAGTTATGGTCTTCCCAGTAAGAGTTTTCACAAAGATCTGC 986
Query 192535 AT 192536
||
Sbjct 985 AT 984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 961543086567000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |