Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq8128 86.0 1e-11 seq752483 84.2 4e-11 >seq8128 Length=3827 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | || || | || | ||| | ||||| ||| || ||| || ||||| | Sbjct 3518 CCACCACGCAGGCGGAGCACCAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCC 3459 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || |||| || | || || || ||||| || || ||||| ||||| || || Sbjct 3458 AGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCCGGAGGG 3399 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || || || || || || || ||||| || ||||| || || || || Sbjct 3398 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTATCCGAAGACTCGACC 3339 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || || || | ||||| | ||| |||||||| Sbjct 3338 TCCAGAGTAATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 3292 >seq752483 Length=2742 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | || || | || | ||| | ||| | ||||| || |||||||| Sbjct 1670 AAGACCACCACGGAGGCGCAGGACAAGATGAAGAGTGGATTCTTTTTGGATGTTATAATC 1611 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || || | || | || |||| || || || ||||| || | ||||| || || || Sbjct 1610 TGCCAAGGTACGCCCATCCTCCAGCTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCTGG 1551 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || ||||| || || || || || || || |||||| || || || || || Sbjct 1550 AGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATGGTGTCGGAGCTCTC 1491 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| || ||||||||||| || | || |||||||| Sbjct 1490 CACCTCAAGAGTAATGGTCTTTCCAGTTAATGTCTTGACAAAAATCTGCAT 1440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 884562032436000