Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq39955 154 4e-32 seq796644 150 5e-31 seq1753413 143 8e-29 seq43222 132 1e-25 seq155069 131 5e-25 seq4069 129 2e-24 seq136729 105 2e-17 seq2302 105 2e-17 seq1747722 100 8e-16 seq49623 87.8 5e-12 seq1744031 84.2 6e-11 >seq39955 Length=16318 Score = 154 bits (170), Expect = 4e-32 Identities = 222/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||||||||||||| ||| | | | ||||||||||| || || ||| ||||| Sbjct 4568 CATAATGTCTTCCATAGCCTTCACGAGCCTCCGCTGAATATATCCCGTCTCAGAGGTTTT 4509 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| | ||| | | ||||||||||||||||||||| | || | || Sbjct 4508 CACAGCAGTATCAATCAAACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCCTGTGG 4449 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || || | || | ||| | ||||| || ||||| ||||| || ||| Sbjct 4448 TGTCAGACCTCGAAGGTAAGAGTTTTCAACAAACCCACGACTTTCGGGGCCATAGTCATC 4389 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 || || ||||| |||| || | | || | || ||||||| ||||| || ||||| Sbjct 4388 TTTCGTGAAGTGGGGCAATGTACGATCAACAAAACCAAATGGGATCCGCTTGCCCTCAAC 4329 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||||||||| | || | | |||| ||||||||||| | |||||| || ||||| Sbjct 4328 ATTCTGCTGTCCGACACAAGCAGTCATTTGCGAAATATTGATGAAACTGCCTTTTGAGCC 4269 Query 302865 AGCATTTACCATA 302877 ||| | |||||| Sbjct 4268 TGCAGTGACCATA 4256 >seq796644 Length=3169 Score = 150 bits (166), Expect = 5e-31 Identities = 222/313 (71%), Gaps = 1/313 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| ||||| |||||| ||| | | | ||||||||||| ||||| || ||||| Sbjct 2627 CATTATGTCCTCCATAGCCTTCACGAGCCTGCGCTGAATATATCCAGTCTCGGAAGTTTT 2568 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| | ||| | | ||||||||||||||||||||| | |||| || Sbjct 2567 CACAGCAGTATCAATCAAACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCTTGTGG 2508 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | ||| || | || | ||| |||| || || ||||| |||||| | ||| | Sbjct 2507 TGTTAGGCCTCGAAGGTAAGAGTTCTCCACAAATCCACGACTCTCGGGGCCGTAGTC-AT 2449 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| || ||||| |||| || | | || | || |||| || ||||| || |||| Sbjct 2448 CTTCGTGAAGTGGGGCAATGTACGATCAACAAAACCAAATGGAATCCGCTTGCCCTCAAT 2389 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||||||||| | || | | |||| ||||||||||| | |||||| || ||||| Sbjct 2388 ATTCTGCTGTCCGACACAAGCAGTCATTTGCGAAATATTAATGAAACTGCCTTTTGAGCC 2329 Query 302865 AGCATTTACCATA 302877 ||| | |||||| Sbjct 2328 TGCAGTGACCATA 2316 >seq1753413 Length=6987 Score = 143 bits (158), Expect = 8e-29 Identities = 235/339 (69%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| ||||| |||||| | ||| ||||| |||||| ||| | | | ||| Sbjct 300 TTTCTCACGGTACCATCATATTTTACCATGATGTCCTCCATAGCCTTCACGAGCCTCCGC 359 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| || || || ||||| ||||| |||||||| | ||| | | ||||||| Sbjct 360 TGAATATATCCCGTCTCGGAAGTTTTCACAGCAGTATCAATCAAACCCTCTCTACCACCC 419 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | |||| ||| || || | || | ||| |||| ||||| Sbjct 420 ATAGCATGGAAGAAGAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACGAAC 479 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| ||||| || ||| | || ||||| |||| || | || | Sbjct 480 CCACGGCTTTCGGGGCTGTCATCGTTTTGCGTGAAGTGGGGCAATGTACGACCAGCAAAA 539 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || ||||||| | ||| || ||||| ||||||||||| | ||| | ||||||||||| Sbjct 540 CCAAATGGGATCCTCTTGCCCTCAACATTCTGCTGTCCGACGCAAGCGGTCATCTGCGAA 599 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||||| | ||| || || ||||| ||| | |||||| Sbjct 600 ATATTAATGAAACTACCTTTTGAGCCTGCAGTGACCATA 638 >seq43222 Length=7435 Score = 132 bits (146), Expect = 1e-25 Identities = 235/340 (69%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || || ||||| |||||| | ||| ||||| ||||| ||| | | | ||| Sbjct 6590 TTCCTCACGGTACCATCATATTTGACCATGATGTCCTCCATGGCCTTCACGAGCCTCCGC 6531 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| ||||| ||| ||||| ||||| ||||| || | ||| | | ||||||| Sbjct 6530 TGAATATATCCAGTCTCAGAAGTTTTCACAGCAGTATCGATCAAACCTTCTCTACCACCC 6471 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | || | ||| || || | || | ||| |||| ||||| Sbjct 6470 ATAGCATGGAAGAAGAATTCCTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACGAAT 6411 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| ||||| || || | ||| | ||||| || || || | || | Sbjct 6410 CCACGGCTTTCGGGGCCATAGT-TATTTTGTGAGAAGTGGGGTAGTGTACGACCAGCAAA 6352 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || ||||||| | ||| || ||||| ||||||||||| | ||| | | ||||||| || Sbjct 6351 ACCAAATGGGATCCTCTTGCCCTCAACATTCTGCTGTCCGACGCAAGCAGTCATCTGTGA 6292 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||| | |||||| || ||||| ||| | |||||| Sbjct 6291 AATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 6252 >seq155069 Length=4998 Score = 131 bits (144), Expect = 5e-25 Identities = 219/315 (70%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | | | ||||||||||| | ||| ||| ||||| Sbjct 153 CATAATATCCTCCATAGCCTTCACGAGCCTCCGCTGAATATATCTAGTCTCAGAAGTTTT 212 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| | ||| | | ||||||||||||||||||||| | || | || Sbjct 213 CACGGCAGTATCAATCAAACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCCTGTGG 272 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CGAATCGTCG 302742 | || || | || | ||| |||| || || ||||| ||||| | || ||| Sbjct 273 TGTCAGGCCTCGAAGGTAAGAGTTCTCCACAAATCCACGACTTTCGGGGCCCAA--GTCA 330 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCA 302802 || || ||||| |||| || | | || | || |||| || ||||| || ||| Sbjct 331 TTTTTCGTGAAGTGGGGCAATGTACGATCAACAAAACCAAATGGAATCCGCTTGCCCTCA 390 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAG 302862 || ||||||||||| | || | | |||| ||||||||||| | ||| ||||| ||| Sbjct 391 ACATTCTGCTGTCCGACACAAGCAGTCATTTGCGAAATATTAATGAAACTCCCCTTTGAG 450 Query 302863 CCAGCATTTACCATA 302877 || ||| | |||||| Sbjct 451 CCTGCAGTGACCATA 465 >seq4069 Length=14202 Score = 129 bits (142), Expect = 2e-24 Identities = 232/339 (68%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| ||||| |||||| | ||| ||||| |||||| ||| | | | | | Sbjct 1464 TTTCTCACGGTACCATCATATTTCACCATGATGTCCTCCATAGCCTTCACGAGCCTCCTC 1523 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || || || ||||| ||| ||||| ||||| |||||||| | ||| | | ||||||| Sbjct 1524 TGTATGTATCCAGTCTCAGAAGTTTTCACAGCAGTATCAATCAAACCTTCTCTACCACCC 1583 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | || | ||| || || | || | ||| |||| || || Sbjct 1584 ATAGCATGGAAGAAAAATTCCTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACAAAT 1643 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| ||||| | || || || ||||| |||| || | | | | Sbjct 1644 CCACGACTTTCGGGGCCGTAGTTATCTTTCGTGAAGTGCGGCAATGTACGATCAATAAAA 1703 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || ||||| || ||||| || ||||| ||||||||||| | || | | |||| || ||| Sbjct 1704 CCATATGGAATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGTGAA 1763 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||||| | ||||||||| ||||| ||| | |||||| Sbjct 1764 ATATTAATGAAACTGCCCTTTGAGCCTGCAGTGACCATA 1802 >seq136729 Length=8496 Score = 105 bits (116), Expect = 2e-17 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 ||||| ||||| | |||||| | ||| | | || | |||||||||||||||| | ||| Sbjct 3066 GTTTTCACAGCAGCATCAATCAAACCTTCTCTACTAACCATAGCATGGAAGAAAAACTCC 3007 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 | ||| || || | || | ||| ||| ||| || ||||| ||||| | | Sbjct 3006 TGTGGTGCCAGACCTCGAAGGTAAGAGTTCTGAACAAACCCACGACTTTCGGGGCCGTAG 2947 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 || || |||||||| |||| || | | || | || |||| || ||||| || Sbjct 2946 TCATCTTTCGTAAAGTGGGGCAATGTACGATCAACAAAACCAAATGGAATCCGCTTGCCC 2887 Query 302800 TCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTG 302859 |||| ||||||||||| || || | |||| ||||||||||| | |||||| || Sbjct 2886 TCAATTTTCTGCTGTCCGAGACAGGCGGTCATTTGCGAAATATTAATGAAACTGCCTTTT 2827 Query 302860 GAGCCAGCATTTACCATA 302877 ||||| ||| | |||||| Sbjct 2826 GAGCCTGCAGTGACCATA 2809 >seq2302 Length=8615 Score = 105 bits (116), Expect = 2e-17 Identities = 199/291 (68%), Gaps = 25/291 (9%) Strand=Plus/Minus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 ||||| || ||||| |||||||||||||| ||| ||| | | || ||| Sbjct 1859 TGATTTAGGGTTTGGTCCCTTTCATCATTAAAACTTCT------------ACCTCTGCTT 1812 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 |||||||||||||| ||||||||| ||||| | |||||| | || | | || Sbjct 1811 CC---ACCAACAGCATCAAGTTCGTCAATAAAAATGATTGACGGAGCAGCTTCTTTGGC- 1756 Query 289084 ATTGC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 || | || || || |||||||||| |||||| |||||| ||||||| || |||| Sbjct 1755 -TTCCTTGAACAAATCCCTTACACGGGCTGCTCCTCTTCCAACAAACATTTCAACGAATT 1697 Query 289142 CAGAAGCGGATACTTGAATGAATG---TTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 || || || || | ||||| || || || || ||||| |||||| |||||| Sbjct 1696 CACTTGCAGAAACAGAGAAGAATGGAATTCCA---GCCTCTCCTGCAACTGCCTTCGCCA 1640 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTA 289249 | | || || || |||||||| || || | | ||||| ||| | |||| Sbjct 1639 GCAAAGTTTTCCCGGTTCCAGGAGGGCCAGCAAGCAGAACACCCCTGGGTA 1589 >seq1747722 Length=10762 Score = 100 bits (110), Expect = 8e-16 Identities = 209/305 (69%), Gaps = 16/305 (5%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| ||||| |||||||| | ||| ||||| || ||||||||||| |||| ||| Sbjct 856 GGCAATAAGTCCACACTTCTCACAAACATGCACTCTGTAAGCATCGCTCTGGTCAAATAA 915 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCG---TGTGAAATCATACAATCACGCTCCATTTC 251519 || |||| ||| | ||||| || || | |||||| ||||| | ||||||||| Sbjct 916 CCTTTCCTTCAGGAA---AAATGCAGCGCCATGAGCAATCATGCAATCCCTCTCCATTTC 972 Query 251520 ACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAAC 251579 || ||||| ||||||||||| || | | ||||| || ||||| | || || | Sbjct 973 TCCAAAACGGAGACCACCATCACGTGAGCGCCCCTCTGCTGGCTGTCTGGTCAGTATCTG 1032 Query 251580 CATAGGAC--CGA--TGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCT 251635 | ||||| ||| | || | || ||| |||| ||||||||||| || | || Sbjct 1033 GACAGGACCACGACCTCTAGAGTGAATTTTG----TCATCCACCATATGCTTAAGTCTCT 1088 Query 251636 GGTAGAATGCGGGACCGATGAAGATGCTCGAAGGC-ATTTGCTCTCCAGTTAGAGCGTTA 251694 ||||| | | ||||| | ||| || | | || | |||| ||| ||||| || | || Sbjct 1089 GGTAGTAAGTTGGACCTAAGAAAATCATTGCAGTCAATTTTCTC-CCAGTATGACCATTG 1147 Query 251695 TACAT 251699 ||||| Sbjct 1148 TACAT 1152 >seq49623 Length=10526 Score = 87.8 bits (96), Expect = 5e-12 Identities = 81/102 (79%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 156050 ACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAG 156106 ||| || |||||||| || |||||||| || |||||||| | ||||||||||| || Sbjct 4057 ACCCTTTCTCTTGCCTCCGCCTTGATCTACGTAACGAGCAGTATCATTGAAGACACGTAA 3998 Query 156107 CATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAAT 156148 ||| |||| ||| |||||||| || ||||| || || ||||| Sbjct 3997 CATGGGAACAATCCCATTGGATGTCCCATTTGTCCCTCGAAT 3956 >seq1744031 Length=21007 Score = 84.2 bits (92), Expect = 6e-11 Identities = 212/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||||||||| ||||| || | | || || | | || | || | Sbjct 7561 ACCAATTGCATCAATTTCATCAATAAATACAATACTAGGTGCACATTCCCGAGCTTCTTG 7502 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| ||| || | ||||| ||||| ||||||| ||||||| | || || ||| | Sbjct 7501 AAATAAGCTTCTCACCCTGGATGGTCCAACACCAACAAACATTTCCAAGAAGTCTGAACC 7442 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | | || | ||| | |||| | || || || || | || || || |||| Sbjct 7441 AGA-AATAGACAAGAAAGGTACACCAGACTCTCCAGCAGTAGCTTTAGCAAGGAGAGTCT 7383 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||| ||||| || || | ||| | ||||| |||| ||| || ||||| || Sbjct 7382 TTCCTGTGCCAGGGGGGCCACAAAGAAGAGCACCCTTCGGTATTTTAGCTCCCAG-AGCT 7324 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||| || || | || | || | |||| |||| | ||| | ||| || ||| Sbjct 7323 TCATATTTGTCGGGATTTTTCAGGAAATGAACAAATTCCATGATTTCTTGTTTAGCTTCA 7264 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 7263 TCACAACCAGCTACATC 7247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1437526448447540