Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq45179 462 2e-125 seq57095 269 3e-67 seq155648 178 1e-39 seq213450 165 9e-36 seq352821 125 8e-24 seq856698 120 3e-22 seq36335 109 6e-19 seq788035 104 3e-17 seq79754 98.7 1e-15 seq159272 96.9 4e-15 >seq45179 Length=9647 Score = 462 bits (512), Expect = 2e-125 Identities = 557/755 (74%), Gaps = 2/755 (0%) Strand=Plus/Minus Query 159558 CGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTA 159617 || ||||| ||| | || || |||||| |||||| || |||||||| || || || ||| Sbjct 9637 CGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTA 9578 Query 159618 ATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTATCCGTCCTTACAA 159676 || ||||||||| | || || |||||||| || || ||| | | | || ||||| || Sbjct 9577 ATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAA 9519 Query 159677 TGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATT 159736 ||| || | ||||||||||| |||||||||||||| || ||||| || || ||| | Sbjct 9518 TGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACT 9459 Query 159737 GGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCT 159796 ||| || || ||||||| || || ||| ||||| || ||||| || ||| ||||| | Sbjct 9458 GGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCAT 9399 Query 159797 GTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGC 159856 | ||| | ||||||||||| || |||||||| || || || ||||||||||||||||| Sbjct 9398 CCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 9339 Query 159857 TGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACT 159916 || || |||| | || || || | || || ||||| | || ||||| ||||| || Sbjct 9338 CGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCT 9279 Query 159917 GTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGA 159976 | ||| || || || ||||||||||| || ||| | ||||||||| || || Sbjct 9278 ATTTGAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 9219 Query 159977 GACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTC 160036 ||||| || ||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| Sbjct 9218 AACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTC 9159 Query 160037 TAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATC 160096 || || || ||| | |||||||| ||| | ||||| || || | ||| | |||| Sbjct 9158 CAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 9099 Query 160097 CTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGA 160156 |||||||| | ||||| | ||||| || | ||||| || || || || || || Sbjct 9098 TGCTATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGA 9039 Query 160157 GATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAA 160216 ||| | ||||| |||||||| ||||||||||| |||||||||||||| || || || || Sbjct 9038 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAA 8979 Query 160217 CGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCC 160276 ||| || | ||||| ||| ||||| || ||||| || |||||||| |||| ||||| Sbjct 8978 CGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCC 8919 Query 160277 AGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 || || || | || | || ||||| ||||||| Sbjct 8918 TGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 8884 >seq57095 Length=8353 Score = 269 bits (298), Expect = 3e-67 Identities = 365/506 (72%), Gaps = 2/506 (0%) Strand=Plus/Minus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | ||| ||||| || | || || || || |||| |||||||| || || Sbjct 505 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 446 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | ||||| ||||| || || |||||||| ||||||| || Sbjct 445 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 387 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 386 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 327 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 326 TATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 267 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 266 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 207 Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938 | |||||| | ||||| | | || ||||| ||||||||||||||| | ||| Sbjct 206 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 147 Query 157939 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 157998 | | ||||||||||| ||||| ||| |||||||| ||||| || || || || |||| Sbjct 146 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 87 Query 157999 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158058 ||| ||| | | || ||| | |||||||| || || |||| ||||||| | || || Sbjct 86 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAAT 27 Query 158059 CTCTGGTACTTTTAACTACATGCTTG 158084 |||||||||||| |||| ||| ||| Sbjct 26 CTCTGGTACTTTCAACTTTATGATTG 1 >seq155648 Length=2022 Score = 178 bits (196), Expect = 1e-39 Identities = 224/308 (73%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 159690 TCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGT 159749 |||||||| |||||| ||||||| ||| ||||| || || ||| ||| || || || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 159750 TGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAA 159809 ||||| || || ||| ||||| |||||| | || || ||||| | | ||| | ||| Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 159810 GGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 159869 |||||||| || |||||||| || || || ||||||||||||||||| || || |||| Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 159870 GGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGA 159929 | | || | | || || ||||| | || ||||| ||||| || | ||| || || Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 159930 GAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATG 159989 || ||||||||||| || ||| | ||||||||| || || ||||| || ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 159990 GTCACTGC 159997 |||||||| Sbjct 1722 GTCACTGC 1715 >seq213450 Length=3525 Score = 165 bits (182), Expect = 9e-36 Identities = 222/310 (72%), Gaps = 7/310 (2%) Strand=Plus/Plus Query 157995 CTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTG 158054 ||||||| ||| | | || || | |||||||| || || |||| ||||||| | | Sbjct 3221 CTGCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAG 3280 Query 158055 GTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGC 158114 | |||||||||||||| |||| ||| ||||||| || |||| ||||||||| |||||| Sbjct 3281 GAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGC 3340 Query 158115 ACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGC 158174 | | || || ||| | ||||| ||||| ||||||| || || || ||| |||||||| Sbjct 3341 ATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGC 3400 Query 158175 ACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACT 158234 | || | || || ||| | ||||| ||||||| || || || Sbjct 3401 ATGGTTCCATGGTAGTTTGATCA-------GGGAAACTACTGAAAATGAATCCGCTAATG 3453 Query 158235 ACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACT 158294 | |||||||| || ||||||||||||||||| ||||| || || || || ||||| || | Sbjct 3454 AGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATT 3513 Query 158295 TCGGTCGTTT 158304 | || || || Sbjct 3514 TTGGCCGATT 3523 >seq352821 Length=202 Score = 125 bits (138), Expect = 8e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 160099 CTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGA 160158 |||||||| | ||||| | ||||| || | ||||| || || || || || || | Sbjct 16 CTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAA 75 Query 160159 TCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACG 160218 || | ||||| |||||||| |||||||| || |||||||||||||| || || || |||| Sbjct 76 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTTTTAAACG 135 Query 160219 AAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAG 160278 | || | ||||| ||| ||||| || ||||| || |||||||| |||| ||||| | Sbjct 136 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 195 Query 160279 AAGAAGT 160285 | || || Sbjct 196 AGGAGGT 202 >seq856698 Length=257 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 158423 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 158482 || |||||||| |||||||| || | ||||| |||| ||||| || | || || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 158483 GCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 158542 || ||| | | ||||| ||| |||||||||||||| |||||||| ||||| || ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 158543 AACTTCCCACTCGACCTTGCTGCTGCTGA 158571 |||||||| || ||| | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq36335 Length=20465 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 158012 TATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTT 158071 || ||| | |||||||| || || |||| ||||| | | || ||||| |||||||| Sbjct 3521 TACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTC 3462 Query 158072 AACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTC 158131 |||| ||| |||||||||| ||||| ||||||||||||||||| || ||||| ||| | Sbjct 3461 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 3402 Query 158132 GGTGT 158136 ||||| Sbjct 3401 GGTGT 3397 >seq788035 Length=1366 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296 |||||||| || |||||||||||||| || |||||||| || || || |||| || | Sbjct 958 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATATT 1017 Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158356 || | || ||||||||||| ||| || |||||||| ||||| || ||||||||| | Sbjct 1018 GGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 1077 Query 158357 GCTGC 158361 ||||| Sbjct 1078 GCTGC 1082 >seq79754 Length=5746 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 159936 GCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACT 159995 ||||||||||| || ||| | ||||||||| || || ||||| || ||||||||| Sbjct 4793 GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 4852 Query 159996 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160055 || ||||| || ||||| || ||||| | | |||| ||||| || || | ||| | ||| Sbjct 4853 GCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTTGGTTACAT 4912 Query 160056 TTCTTCATGTTGTTTGT 160072 ||||| ||| | ||||| Sbjct 4913 TTCTTTATGCTATTTGT 4929 >seq159272 Length=944 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 159688 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCA 159747 ||||||| || |||| | |||||| || ||||| || |||||| | || || || Sbjct 305 TCTCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTG 246 Query 159748 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTC 159807 ||||||| | || | ||||| | ||||| || ||| ||||| | | ||| | | Sbjct 245 GTTGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCTTTTCTTCC 186 Query 159808 AAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 159867 |||||||||| || ||||| || || || || |||||||||||| ||| | | || ||| Sbjct 185 AAGGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGATTTGATAGAGTATTAG 126 Query 159868 GTG 159870 ||| Sbjct 125 GTG 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535909712794400