Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq57095 242 4e-59 seq213450 141 1e-28 seq788035 111 2e-19 seq36335 102 9e-17 seq856698 84.2 2e-11 >seq57095 Length=8353 Score = 242 bits (268), Expect = 4e-59 Identities = 351/493 (71%), Gaps = 2/493 (0%) Strand=Plus/Minus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| |||||| ||||| | ||| | || ||||| ||||| || |||||||| Sbjct 496 TGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 438 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 437 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 378 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 377 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 318 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 ||||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 317 TGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 258 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || || | || |||||||| || || || |||||||| || || || || | ||||| Sbjct 257 TGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTT 198 Query 72543 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 72602 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 197 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 138 Query 72603 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 72662 | | |||||||| ||| ||||| ||||| ||||| | || || ||| || ||| | Sbjct 137 GCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 78 Query 72663 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 72722 | || || | ||||| || || |||||||||||||| |||| ||||| ||||| Sbjct 77 GATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTAC 18 Query 72723 GTTCAACTTCATG 72735 |||||||| ||| Sbjct 17 TTTCAACTTTATG 5 Score = 125 bits (138), Expect = 8e-24 Identities = 177/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| |||||| || || |||||||| || | ||||||||||| || || || || Sbjct 8101 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 8160 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 ||||||||||| | || | || |||||||| ||| || ||||| || || || ||| Sbjct 8161 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8220 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTA 73555 || || ||||| | ||| || ||| | || || ||||| ||||| |||||||| Sbjct 8221 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTAACCGCAGCAGTT 8280 Query 73556 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAA 73615 || || |||| || | | | || | | ||| | || ||||| ||||| |||||| Sbjct 8281 TCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACAA 8340 Query 73616 GGAGATCTT 73624 |||||| || Sbjct 8341 GGAGATTTT 8349 >seq213450 Length=3525 Score = 141 bits (156), Expect = 1e-28 Identities = 208/292 (71%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 72670 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 72729 ||||| ||||| || || |||||||||||||| |||| ||||| ||||| |||||| Sbjct 3242 CCATT-GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 3300 Query 72730 TTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGT 72789 || ||| | || || || |||| |||||||| | ||||| | || || ||| |||| Sbjct 3301 TTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGT 3360 Query 72790 GTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCA 72849 ||||| ||| | |||| ||| || |||| ||| ||||| ||||| | || || || Sbjct 3361 GTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCATGGTTC-CATGGTAGTT-- 3417 Query 72850 TCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAA 72909 | ||||| || || || || || || || | || || || || || ||| Sbjct 3418 ----TGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAA 3473 Query 72910 GAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAA 72961 || ||||| || ||||| ||||| ||||||||||| || || || |||||| Sbjct 3474 GAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAA 3525 >seq788035 Length=1366 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 72892 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTC 72951 || || || || || ||||| |||||||| ||||||||||| |||||| |||| || | Sbjct 958 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATATT 1017 Query 72952 GGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTC 73011 || |||||||||||| ||||| || |||||||||||||| |||||||||||| | Sbjct 1018 GGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 1077 Query 73012 GCTG 73015 |||| Sbjct 1078 GCTG 1081 >seq36335 Length=20465 Score = 102 bits (112), Expect = 9e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || ||||||||||||| |||| ||||| ||||| |||||||| ||| | || ||||| Sbjct 3500 TTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTCAACTTTATGATTGTATTCCAG 3441 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 72793 ||||| |||||||| || ||||| || ||||| ||| |||||||| Sbjct 3440 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAG 3395 >seq856698 Length=257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 73078 AACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGG 73137 || || ||||| ||||||||||| || || ||| | || || | || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 73138 GGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACAC 73197 | ||| | | ||| | || |||||||| |||||||| ||||||||| | ||||| ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 73198 AACTTCCCACTAGACCTAGCATCTGCTGA 73226 |||||||| |||||| |||| ||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559852039853600