Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1743593 95.1 1e-14 seq752483 95.1 1e-14 seq8128 86.0 5e-12 >seq1743593 Length=9171 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || || ||||| ||||| ||| | || ||| || Sbjct 1542 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAATCTTCA 1483 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 1482 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1423 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || || ||||| ||||||| | || |||||||||||||| Sbjct 1422 CAGAGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTGGCGGATTACAAC 1363 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 1362 ATTCAGAAGGAGTCTACTCTCCACCTGGTG 1333 >seq752483 Length=2742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | |||||||| || || ||| |||| ||| | Sbjct 756 ATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTTGAGGGTTCG 815 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| ||||| || ||| | || ||| ||| Sbjct 816 GATACCATTGACAATGTTAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAA 875 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| ||||||| | | ||| |||| ||||||||| Sbjct 876 CAGAGGCTCATATTTGCTGGCAAGCAGCTAGAGGATGGCCGGACATTGGCCGATTACAAC 935 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| || ||||| Sbjct 936 ATCCAAAAGGAGTCTAC 952 >seq8128 Length=3827 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| | |||||||| |||||||| | || ||| || Sbjct 3292 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATTACTCTGGAGGTCGAGTCTTCG 3351 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| || ||| | || ||| || Sbjct 3352 GATACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 3411 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | |||||| || ||||| ||||| | | || |||||||||||||| Sbjct 3412 CAGAGGTTGATCTTTGCGGGCAAGCAGCTTGAGGACGGTCGCACTCTGGCGGATTACAAC 3471 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || ||||| | || ||||| | | ||||| || || Sbjct 3472 ATTCAGAAGGAGTCTACTCTCCATCTGGTGCTCCGCCTGCGTGGTGG 3518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403692207041060