Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq498720 107 5e-19 >seq498720 Length=623 Score = 107 bits (118), Expect = 5e-19 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 18917 TTACGTCGCCACACGGCCATCAGAAGTGCATT-CAGGACAATATCCTTTGTCATCCGGGG 18975 ||||| ||||||| |||||| | || |||| |||| || | | | ||||| || || Sbjct 352 TTACGCCGCCACAGCGCCATCTGCAGGGCATCGCAGGCCAGT-TGCGCCGTCATGCGTGG 294 Query 18976 CTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAG 19035 | |||||||||||||||||| || || ||||||||| ||||| ||||||||||| Sbjct 293 CGACATTGACCAGCCAATAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAG 234 Query 19036 CCAGCCTTCGTGAGTCCGGATGTAGGTGATGTC 19068 ||||||||| | || || | ||| |||||||| Sbjct 233 CCAGCCTTCATCTGTACGTAAGTACGTGATGTC 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124359349588800